C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (sem
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000082684 SEMA5B 9606 - 3:122909193-123028605 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000195173 SEMA5B-201 122909193-123027812 protein_coding
  ENST00000357599 SEMA5B-001 122909194-123027812 protein_coding
  ENST00000393583 SEMA5B-003 122910873-122993273 protein_coding
  ENST00000421053 SEMA5B-005 122943437-123027578 protein_coding
  ENST00000449546 SEMA5B-008 122948582-122975370 protein_coding
  ENST00000451055 SEMA5B-202 122909193-122976134 protein_coding
  ENST00000451541 SEMA5B-004 122909194-122912267 protein_coding
  ENST00000465147 SEMA5B-006 122943431-123027766 processed_transcript
  ENST00000475244 SEMA5B-002 122909194-123028605 nonsense_mediated_decay
  ENST00000477001 SEMA5B-007 122948552-123027578 processed_transcript
  ENST00000616742 SEMA5B-203 122909193-122993273 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000195173ENST00000357599ENST00000393583ENST00000449546ENST00000451055ENST00000451541ENST00000475244ENST00000616742
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000195173 0.240±0.00 0.497±0.00 N/A 0.430±0.00 0.117±0.00 0.095±0.00 0.542±0.00 0.030±0.00 0.031±0.00 0.013±0.00 N/A 0.175±0.00 N/A 0.178±0.00
ENST00000357599 N/A 0.102±0.00 N/A 0.699±0.00 0.528±0.00 N/A 0.337±0.00 0.775±0.00 N/A N/A N/A 0.448±0.16 1.279±0.00 0.234±0.00
ENST00000393583 N/A N/A 0.176±0.00 N/A N/A N/A 0.057±0.00 N/A N/A N/A 0.072±0.00 0.021±0.00 N/A N/A
ENST00000449546 N/A N/A N/A N/A 0.981±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000451055 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.305±0.00 1.694±0.00 N/A
ENST00000451541 N/A 0.377±0.00 0.300±0.00 1.521±0.15 0.248±0.14 N/A N/A 0.390±0.38 0.190±0.00 0.012±0.00 N/A 1.153±0.39 2.138±1.06 0.734±0.26
ENST00000475244 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.229±0.00 0.944±0.00 N/A
ENST00000616742 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.276±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008J4 CIL_0008J4_0001 VISTA 3:122671455-123276444
CIL_0005BK CIL_0005BK_0002 CGP 3:122794795-123028605
CIL_000074 CIL_000074_0002 CGP 3:122909193-123225227

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IEA protein binding
GO:0007275 IEA multicellular organismal development
GO:0007399 IEA nervous system development
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061471 sema5ba sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (sem protein_coding Danio_rerio
ENSDARG00000075648 sema5bb sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (sem protein_coding Danio_rerio
ENSMUSG00000052133 Sema5b sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (sem protein_coding Mus_musculus

Loading