C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (sem
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000451541 SEMA5B-004 ENSG00000082684 9606 - 3:122909194-122912267 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastKidneyLiverLungOvaryPlacentaTestisENST00000451541
Transcript ID Adrenal Bladder Brain Breast Kidney Liver Lung Ovary Placenta Testis
ENST00000451541 0.377±0.00 0.300±0.00 1.521±0.15 0.248±0.14 0.390±0.38 0.190±0.00 0.012±0.00 1.153±0.39 2.138±1.06 0.734±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008J4 CIL_0008J4_0001 VISTA 3:122671455-123276444
CIL_0005BK CIL_0005BK_0002 CGP 3:122794795-123028605
CIL_000074 CIL_000074_0002 CGP 3:122909193-123225227

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120756 Sema5b-003 protein_coding Mus_musculus 0 979
ENSMUST00000050625 Sema5b-001 protein_coding Mus_musculus 0 979
ENSMUST00000128347 Sema5b-006 protein_coding Mus_musculus 0 704
ENSMUST00000128966 Sema5b-005 retained_intron Mus_musculus 0 606
ENSMUST00000149855 Sema5b-007 protein_coding Mus_musculus 0 412

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