C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (sem
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000052133 Sema5b 10090 + 16:35541145-35664732 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000050625 Sema5b-001 35541571-35664261 protein_coding
  ENSMUST00000120756 Sema5b-003 35541362-35664261 protein_coding
  ENSMUST00000128347 Sema5b-006 35661305-35663314 protein_coding
  ENSMUST00000128966 Sema5b-005 35662471-35663454 retained_intron
  ENSMUST00000133554 Sema5b-002 35541145-35648140 retained_intron
  ENSMUST00000139805 Sema5b-008 35658095-35658487 retained_intron
  ENSMUST00000149097 Sema5b-004 35659435-35660280 retained_intron
  ENSMUST00000149855 Sema5b-007 35658585-35664732 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000050625ENSMUST00000120756ENSMUST00000128347ENSMUST00000128966ENSMUST00000133554ENSMUST00000149097ENSMUST00000149855
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000050625 0.718±0.21 1.467±0.00 0.085±0.03 8.755±4.01 0.233±0.18 0.172±0.04 0.082±0.02 0.148±0.09 0.164±0.10 0.065±0.05 0.056±0.03 0.708±0.49 0.811±0.48 8.902±3.80
ENSMUST00000120756 0.740±0.21 8.843±4.77 0.059±0.00 5.754±0.04 0.350±0.14 0.183±0.06 0.093±0.00 0.261±0.11 0.061±0.04 0.061±0.00 N/A 1.207±0.47 0.214±0.05 4.661±0.50
ENSMUST00000128347 N/A N/A N/A 10.128±0.00 N/A N/A N/A N/A N/A 0.172±0.00 0.114±0.05 1.601±0.00 5.684±4.72 9.049±0.00
ENSMUST00000128966 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.081±0.04 N/A N/A N/A
ENSMUST00000133554 N/A 4.330±1.99 N/A N/A N/A N/A N/A N/A 0.019±0.00 0.038±0.00 0.020±0.00 N/A N/A N/A
ENSMUST00000149097 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.213±0.00 N/A N/A N/A
ENSMUST00000149855 N/A 8.579±3.25 N/A N/A N/A 0.241±0.10 N/A 0.267±0.00 0.117±0.00 0.071±0.00 N/A 1.474±0.31 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008J4 CIL_0008J4_0002 VISTA 16:35298618-35902946

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0007399 IEA nervous system development
GO:0016021 IEA integral component of membrane
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061471 sema5ba sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (sem protein_coding Danio_rerio
ENSDARG00000075648 sema5bb sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (sem protein_coding Danio_rerio
ENSG00000082684 SEMA5B sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (sem protein_coding Homo_sapiens

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