C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (sem
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000195173 SEMA5B-201 ENSG00000082684 9606 - 3:122909193-123027812 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryTestisENST00000195173
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Testis
ENST00000195173 0.240±0.00 0.497±0.00 0.430±0.00 0.117±0.00 0.095±0.00 0.542±0.00 0.030±0.00 0.031±0.00 0.013±0.00 0.175±0.00 0.178±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008J4 CIL_0008J4_0001 VISTA 3:122671455-123276444
CIL_0005BK CIL_0005BK_0002 CGP 3:122794795-123028605
CIL_000074 CIL_000074_0002 CGP 3:122909193-123225227

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IEA protein binding
GO:0007275 IEA multicellular organismal development
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000050625 Sema5b-001 protein_coding Mus_musculus 0 3295
ENSMUST00000120756 Sema5b-003 protein_coding Mus_musculus 0 2868
ENSMUST00000149855 Sema5b-007 protein_coding Mus_musculus 0 976
ENSMUST00000133554 Sema5b-002 retained_intron Mus_musculus 0 721
ENSMUST00000128347 Sema5b-006 protein_coding Mus_musculus 0 664
ENSMUST00000128966 Sema5b-005 retained_intron Mus_musculus 0 606
ENSMUST00000139805 Sema5b-008 retained_intron Mus_musculus 0 215

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