C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000082996 RNF13 9606 + 3:149812708-149962139 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000344229 RNF13-003 149812770-149962122 protein_coding
  ENST00000361785 RNF13-002 149872073-149962126 protein_coding
  ENST00000392894 RNF13-001 149812708-149962139 protein_coding
  ENST00000459632 RNF13-010 149813837-149902159 protein_coding
  ENST00000466478 RNF13-006 149813049-149872049 protein_coding
  ENST00000466795 RNF13-011 149817242-149902152 protein_coding
  ENST00000467977 RNF13-008 149813215-149960765 protein_coding
  ENST00000467996 RNF13-016 149813265-149960750 nonsense_mediated_decay
  ENST00000468289 RNF13-018 149911993-149961374 protein_coding
  ENST00000468648 RNF13-009 149813820-149895498 protein_coding
  ENST00000470151 RNF13-005 149812833-149872074 protein_coding
  ENST00000474348 RNF13-014 149813228-149960833 nonsense_mediated_decay
  ENST00000482083 RNF13-017 149895240-149961011 protein_coding
  ENST00000490631 RNF13-015 149846020-149921184 protein_coding
  ENST00000491086 RNF13-007 149813204-149961016 protein_coding
  ENST00000493238 RNF13-019 149959957-149961374 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000344229ENST00000361785ENST00000392894ENST00000467996ENST00000468289ENST00000474348ENST00000490631
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000344229 N/A N/A N/A N/A N/A N/A N/A 1.753±0.00 2.773±0.00 N/A N/A N/A N/A N/A
ENST00000361785 N/A N/A N/A 14.282±0.00 N/A N/A N/A 10.202±0.00 6.203±0.00 4.377±0.00 N/A N/A 7.002±0.00 N/A
ENST00000392894 15.012±0.00 10.155±0.00 1.656±0.00 39.668±0.00 16.699±0.00 12.503±0.00 6.348±4.06 14.736±0.00 7.570±0.00 12.594±0.86 10.804±0.00 7.491±2.48 10.604±3.39 10.727±5.77
ENST00000467996 N/A N/A 9.315±0.00 N/A N/A N/A 3.674±0.00 N/A 9.646±0.00 36.302±0.00 N/A N/A N/A N/A
ENST00000468289 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.390±0.00 N/A
ENST00000474348 N/A N/A 5.425±0.00 N/A 12.969±0.00 8.707±0.00 2.629±0.00 8.189±0.00 11.646±0.00 N/A N/A N/A N/A N/A
ENST00000490631 N/A N/A N/A N/A N/A N/A 5.086±0.00 N/A N/A N/A N/A 21.011±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002R7 CIL_0002R7_0001 CGP 3:149738470-149968385
CIL_0002R6 CIL_0002R6_0001 CGP 3:149761105-149968385
CIL_0002R5 CIL_0002R5_0001 CGP 3:149812708-150050788

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005765 ISS lysosomal membrane
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane
GO:0016874 IEA ligase activity
GO:0031902 ISS late endosome membrane
GO:0046872 IEA metal ion binding
GO:0051865 ISS protein autoubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000036503 Rnf13 ring finger protein 13 protein_coding Mus_musculus

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