C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002R6_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000206199-ENSG00000206199 CGP 9606 3:149761105-149968385
GeneTranscriptPositionBiotype
ENSG00000070087 (PFN2)
profilin 2 		ENST00000239940 (PFN2-001) 149964904-149971109 protein_coding
ENST00000423691 (PFN2-003) 149964913-149970922 protein_coding
ENST00000452853 (PFN2-002) 149964904-149970950 protein_coding
ENST00000460404 (PFN2-004) 149965689-149970904 nonsense_mediated_decay
ENST00000461868 (PFN2-009) 149968154-149970940 protein_coding
ENST00000461930 (PFN2-011) 149968118-149970904 protein_coding
ENST00000468323 (PFN2-012) 149965713-149970898 nonsense_mediated_decay
ENST00000475518 (PFN2-015) 149966260-149970735 protein_coding
ENST00000481275 (PFN2-016) 149966268-149970401 protein_coding
ENST00000481767 (PFN2-006) 149964935-149970715 protein_coding
ENST00000489155 (PFN2-007) 149966316-149971223 protein_coding
ENST00000490975 (PFN2-010) 149966078-149970925 protein_coding
ENST00000494827 (PFN2-019) 149965857-150022811 protein_coding
ENST00000497060 (PFN2-017) 149966053-149968905 retained_intron
ENST00000497148 (PFN2-018) 149966161-150050788 protein_coding
ENST00000498169 (PFN2-013) 149966251-149970882 nonsense_mediated_decay
ENST00000498307 (PFN2-008) 149966285-149971213 protein_coding
ENSG00000082996 (RNF13)
ring finger protein 13 		ENST00000344229 (RNF13-003) 149812770-149962122 protein_coding
ENST00000361785 (RNF13-002) 149872073-149962126 protein_coding
ENST00000392894 (RNF13-001) 149812708-149962139 protein_coding
ENST00000459632 (RNF13-010) 149813837-149902159 protein_coding
ENST00000466478 (RNF13-006) 149813049-149872049 protein_coding
ENST00000466795 (RNF13-011) 149817242-149902152 protein_coding
ENST00000467977 (RNF13-008) 149813215-149960765 protein_coding
ENST00000467996 (RNF13-016) 149813265-149960750 nonsense_mediated_decay
ENST00000468289 (RNF13-018) 149911993-149961374 protein_coding
ENST00000468648 (RNF13-009) 149813820-149895498 protein_coding
ENST00000470151 (RNF13-005) 149812833-149872074 protein_coding
ENST00000474348 (RNF13-014) 149813228-149960833 nonsense_mediated_decay
ENST00000482083 (RNF13-017) 149895240-149961011 protein_coding
ENST00000490631 (RNF13-015) 149846020-149921184 protein_coding
ENST00000491086 (RNF13-007) 149813204-149961016 protein_coding
ENST00000493238 (RNF13-019) 149959957-149961374 retained_intron
ENSG00000239351 (NPM1P29)
nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 29 		ENST00000483112 (NPM1P29-001) 149938997-149939799 processed_pseudogene
ENSG00000252172 (RNU6-720P)
RNA, U6 small nuclear 720, pseudogene 		ENST00000516363 (RNU6-720P-201) 149917342-149917449 snRNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_0002R6_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000074591-ENSMUSG00000036503 CGP 10090 3:57666485-57835233
GeneTranscriptPositionBiotype
ENSMUSG00000036503 (Rnf13)
ring finger protein 13 		ENSMUST00000041826 (Rnf13-201) 57736066-57835233 protein_coding
ENSMUSG00000074591 (Ankub1)
ankrin repeat and ubiquitin domain containing 1 		ENSMUST00000099091 (Ankub1-001) 57666485-57692537 protein_coding

Mus musculus Ensembl (GRCm38)

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Structures from Ensembl
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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002R6_0001ENSG00000070087ENST00000239940ENST00000423691ENST00000452853ENST00000460404ENST00000461868ENST00000461930ENST00000468323ENST00000475518ENST00000481275ENST00000481767ENST00000489155ENST00000490975ENST00000494827ENST00000497060ENST00000497148ENST00000498169ENST00000498307ENSG00000082996ENST00000344229ENST00000361785ENST00000392894ENST00000459632ENST00000466478ENST00000466795ENST00000467977ENST00000467996ENST00000468289ENST00000468648ENST00000470151ENST00000474348ENST00000482083ENST00000490631ENST00000491086ENST00000493238ENSG00000239351ENST00000483112ENSG00000252172ENST00000516363CIL_0002R6_0002ENSMUSG00000036503ENSMUST00000041826ENSMUSG00000074591ENSMUST00000099091
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002R6_0001ENSG00000070087ENST00000239940ENST00000423691ENST00000452853ENST00000468323ENSG00000082996ENST00000344229ENST00000361785ENST00000392894ENST00000467996ENST00000468289ENST00000474348ENST00000490631ENSG00000239351ENST00000483112ENSG00000252172ENST00000516363CIL_0002R6_0002ENSMUSG00000036503ENSMUST00000041826ENSMUSG00000074591ENSMUST00000099091
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000070087 ENST00000239940 N/A 3.900±0.00 N/A 66.812±40.77 N/A 6.587±2.54 12.312±0.00 17.896±0.00 N/A 5.513±0.00 26.126±20.26 12.282±3.98 11.866±0.00 10.825±0.21
ENST00000423691 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.212±0.00 22.173±0.00 16.168±0.00
ENST00000452853 21.192±0.00 5.095±0.00 4.608±0.00 50.143±0.00 19.458±0.00 15.769±0.00 N/A 30.098±0.00 N/A 11.827±0.00 N/A 18.626±7.57 7.727±2.04 24.536±0.00
ENST00000460404 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461930 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.397±0.00 N/A 15.835±0.00
ENST00000475518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481275 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489155 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490975 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494827 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497060 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497148 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498169 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498307 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000082996 ENST00000344229 N/A N/A N/A N/A N/A N/A N/A 1.753±0.00 2.773±0.00 N/A N/A N/A N/A N/A
ENST00000361785 N/A N/A N/A 14.282±0.00 N/A N/A N/A 10.202±0.00 6.203±0.00 4.377±0.00 N/A N/A 7.002±0.00 N/A
ENST00000392894 15.012±0.00 10.155±0.00 1.656±0.00 39.668±0.00 16.699±0.00 12.503±0.00 6.348±4.06 14.736±0.00 7.570±0.00 12.594±0.86 10.804±0.00 7.491±2.48 10.604±3.39 10.727±5.77
ENST00000459632 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466478 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466795 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467977 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467996 N/A N/A 9.315±0.00 N/A N/A N/A 3.674±0.00 N/A 9.646±0.00 36.302±0.00 N/A N/A N/A N/A
ENST00000468289 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.390±0.00 N/A
ENST00000468648 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470151 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474348 N/A N/A 5.425±0.00 N/A 12.969±0.00 8.707±0.00 2.629±0.00 8.189±0.00 11.646±0.00 N/A N/A N/A N/A N/A
ENST00000482083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490631 N/A N/A N/A N/A N/A N/A 5.086±0.00 N/A N/A N/A N/A 21.011±0.00 N/A N/A
ENST00000491086 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493238 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000239351 ENST00000483112 0.054±0.00 0.171±0.00 0.296±0.00 0.063±0.03 0.303±0.19 0.150±0.14 0.096±0.00 0.141±0.00 0.139±0.09 0.132±0.00 0.366±0.00 0.226±0.23 N/A 1.177±1.04
ENSG00000252172 ENST00000516363 N/A 0.914±0.00 N/A N/A N/A N/A N/A N/A N/A 1.157±0.00 N/A N/A N/A 0.801±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000036503 ENSMUST00000041826 29.144±3.70 51.256±14.43 30.772±3.26 12.906±3.17 21.382±3.78 14.681±3.53 17.952±3.96 46.574±8.63 30.076±18.30 28.185±1.09 8.164±2.41 26.243±8.49 12.621±4.83 5.358±2.16
ENSMUSG00000074591 ENSMUST00000099091 0.025±0.00 0.090±0.00 0.018±0.00 0.112±0.13 N/A 0.062±0.00 0.045±0.00 0.037±0.02 0.077±0.07 0.122±0.03 0.007±0.00 0.172±0.09 0.014±0.01 0.174±0.08

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