C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tudor domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000083544 TDRD3 9606 + 13:60396457-60573878 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000196169 TDRD3-201 60396457-60573878 protein_coding
  ENST00000377881 TDRD3-003 60397334-60573872 protein_coding
  ENST00000377882 TDRD3-005 60434049-60485899 protein_coding
  ENST00000377894 TDRD3-001 60396988-60573877 protein_coding
  ENST00000463109 TDRD3-004 60444687-60461040 processed_transcript
  ENST00000471710 TDRD3-006 60528963-60538086 retained_intron
  ENST00000484389 TDRD3-002 60396939-60528837 nonsense_mediated_decay
  ENST00000535286 TDRD3-202 60397293-60573878 protein_coding
  ENST00000621840 TDRD3-203 60434047-60573870 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000196169ENST00000377881ENST00000377882ENST00000377894ENST00000471710ENST00000535286ENST00000621840
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000196169 0.707±0.00 N/A 0.280±0.00 0.673±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.450±0.00 1.291±0.10
ENST00000377881 N/A 2.046±0.00 N/A 1.402±0.68 2.180±0.00 2.788±0.00 2.458±0.06 N/A N/A 1.581±0.33 0.889±0.00 1.812±1.14 1.113±0.00 3.768±0.00
ENST00000377882 N/A N/A 1.439±0.00 3.524±0.00 3.778±0.00 N/A 6.920±0.00 4.950±0.00 7.962±0.00 6.700±0.00 3.043±0.00 N/A N/A N/A
ENST00000377894 N/A N/A N/A N/A N/A N/A N/A 1.844±1.42 0.434±0.00 N/A N/A 1.758±0.61 0.861±0.48 4.714±0.00
ENST00000471710 0.512±0.00 0.731±0.00 N/A 0.844±0.02 0.919±0.37 1.142±0.00 1.085±0.00 0.475±0.00 0.646±0.38 0.652±0.35 0.978±0.00 0.849±0.31 0.235±0.05 N/A
ENST00000535286 1.318±0.00 N/A N/A N/A 1.226±0.00 3.461±0.00 N/A N/A N/A N/A N/A 1.462±0.00 N/A N/A
ENST00000621840 N/A N/A 0.257±0.00 N/A N/A 1.691±0.00 N/A 2.418±0.00 N/A 1.195±0.00 1.928±1.51 2.149±0.02 0.772±0.00 1.673±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000MG CIL_0000MG_0001 CGP 13:59665583-60573878
CIL_0005KQ CIL_0005KQ_0002 CGP 13:60396457-61415522

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0003713 IDA transcription coactivator activity
GO:0003723 IEA RNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA:IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0016568 IEA chromatin modification
GO:0035064 IDA methylated histone binding
GO:0035145 IDA exon-exon junction complex
GO:0044822 IDA poly(A) RNA binding
GO:2001141 IDA regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000025421 tdrd3 tudor domain containing 3 protein_coding Danio_rerio
ENSMUSG00000022019 Tdrd3 tudor domain containing 3 protein_coding Mus_musculus

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