C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tudor domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022019 Tdrd3 10090 + 14:87416639-87545373 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000163714 Tdrd3-005 87471907-87486338 protein_coding
  ENSMUST00000168275 Tdrd3-003 87416639-87545360 protein_coding
  ENSMUST00000169504 Tdrd3-002 87416639-87514766 protein_coding
  ENSMUST00000170712 Tdrd3-004 87457081-87480836 protein_coding
  ENSMUST00000170865 Tdrd3-001 87416666-87545373 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000168275ENSMUST00000169504ENSMUST00000170865
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000168275 1.413±0.56 1.251±0.00 2.812±0.00 6.979±2.21 0.974±0.28 1.422±0.24 1.173±0.22 1.428±0.39 1.372±0.67 1.094±0.04 1.076±0.23 1.886±1.21 1.855±1.12 4.529±0.27
ENSMUST00000169504 0.986±0.23 1.205±0.12 1.540±0.66 1.373±0.05 0.775±0.24 0.540±0.07 0.390±0.05 0.670±0.07 0.414±0.11 1.993±0.25 1.262±0.36 1.307±0.49 0.611±0.32 0.476±0.00
ENSMUST00000170865 0.419±0.00 N/A 2.820±0.00 2.665±1.43 N/A N/A N/A 0.708±0.00 0.744±0.23 N/A 1.415±0.11 12.282±0.00 2.351±1.91 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000MG CIL_0000MG_0002 CGP 14:86655367-87545373
CIL_0005KQ CIL_0005KQ_0003 CGP 14:87416639-88471396

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003682 ISS chromatin binding
GO:0003713 ISS transcription coactivator activity
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0016568 IEA chromatin modification
GO:0035064 ISS methylated histone binding
GO:0035145 ISS exon-exon junction complex
GO:0044822 IEA poly(A) RNA binding
GO:2001141 IEA regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000025421 tdrd3 tudor domain containing 3 protein_coding Danio_rerio
ENSG00000083544 TDRD3 tudor domain containing 3 protein_coding Homo_sapiens

Loading