C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein S5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000083845 RPS5 9606 + 19:58386400-58394806 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000196551 RPS5-201 58387269-58394803 protein_coding
  ENST00000596046 RPS5-002 58387289-58394806 protein_coding
  ENST00000596314 RPS5-004 58386507-58394736 protein_coding
  ENST00000598098 RPS5-005 58387264-58394804 protein_coding
  ENST00000598495 RPS5-006 58387269-58394800 protein_coding
  ENST00000598807 RPS5-007 58387284-58393953 retained_intron
  ENST00000599232 RPS5-003 58393056-58394802 retained_intron
  ENST00000599909 RPS5-008 58387275-58388594 retained_intron
  ENST00000601521 RPS5-001 58386400-58394806 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000196551ENST00000598098ENST00000598807
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000196551 475.914±0.00 579.582±0.00 49.312±0.00 125.966±23.54 291.296±144.73 441.604±349.36 101.701±69.11 235.580±95.26 222.936±70.20 457.125±310.94 292.464±91.06 847.245±593.64 818.681±338.10 298.229±135.79
ENST00000598098 N/A N/A 40.702±0.00 N/A 72.044±0.00 126.713±0.00 13.816±0.00 37.525±0.00 27.280±0.00 N/A 99.379±0.00 75.272±0.00 N/A N/A
ENST00000598807 N/A N/A 7.489±0.00 N/A 65.310±0.00 72.215±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000007 CIL_000007_0001 CGP 19:58386400-58397079

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 IEA:NAS RNA binding
GO:0003729 IDA mRNA binding
GO:0003735 IEA:IDA structural constituent of ribosome
GO:0005829 TAS cytosol
GO:0005925 IDA focal adhesion
GO:0006412 IEA:IGI translation
GO:0006413 IC translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006450 IGI regulation of translational fidelity
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0015935 IEA small ribosomal subunit
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0030529 IDA ribonucleoprotein complex
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043453 rps5 ribosomal protein S5 protein_coding Danio_rerio
ENSMUSG00000012848 Rps5 ribosomal protein S5 protein_coding Mus_musculus

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