C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000196551 RPS5-201 ENSG00000083845 9606 + 19:58387269-58394803 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000196551
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000196551 475.914±0.00 579.582±0.00 49.312±0.00 125.966±23.54 291.296±144.73 441.604±349.36 101.701±69.11 235.580±95.26 222.936±70.20 457.125±310.94 292.464±91.06 847.245±593.64 818.681±338.10 298.229±135.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000007 CIL_000007_0001 CGP 19:58386400-58397079

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 IEA:NAS RNA binding
GO:0003729 IDA mRNA binding
GO:0003735 IEA:IDA structural constituent of ribosome
GO:0005829 TAS cytosol
GO:0005925 IDA focal adhesion
GO:0006412 IEA:IGI translation
GO:0006413 IC translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006450 IGI regulation of translational fidelity
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0015935 IEA small ribosomal subunit
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0030529 IDA ribonucleoprotein complex
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000004554 Rps5-001 protein_coding Mus_musculus 0 929
ENSMUST00000108539 Rps5-002 protein_coding Mus_musculus 0 857
ENSMUST00000137329 Rps5-004 protein_coding Mus_musculus 0 730
ENSMUST00000147435 Rps5-003 protein_coding Mus_musculus 0 728
ENSMUST00000139349 Rps5-006 retained_intron Mus_musculus 0 638

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