C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tetratricopeptide repeat domain 39A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000413473 TTC39A-001 ENSG00000085831 9606 - 1:51287258-51345116 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartKidneyLungMusclePlacentaENST00000413473
Transcript ID Brain Colon Heart Kidney Lung Muscle Placenta
ENST00000413473 0.601±0.00 1.024±0.00 2.676±0.00 14.350±0.00 0.485±0.00 0.517±0.00 0.095±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006WB CIL_0006WB_0002 CGP 1:51236271-51345116
CIL_0006W8 CIL_0006W8_0002 CGP 1:51287258-51519328

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000064129 Ttc39a-001 protein_coding Mus_musculus 0 2235
ENSMUST00000106618 Ttc39a-002 protein_coding Mus_musculus 0 2228
ENSMUST00000153315 Ttc39a-005 protein_coding Mus_musculus 0 634
ENSMUST00000124209 Ttc39a-004 protein_coding Mus_musculus 0 582
ENSMUST00000106619 Ttc39a-003 protein_coding Mus_musculus 0 477
ENSMUST00000139237 Ttc39a-007 protein_coding Mus_musculus 0 414
ENSMUST00000126797 Ttc39a-008 processed_transcript Mus_musculus 0 394
ENSDART00000146469 ttc39a-001 protein_coding Danio_rerio 0 375
ENSDART00000108659 ttc39a-201 protein_coding Danio_rerio 0 326
ENSMUST00000150909 Ttc39a-006 processed_transcript Mus_musculus 0 296
ENSDART00000128403 TTC39A (2 of 2)-201 protein_coding Danio_rerio 0 220

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