C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: autophagy related 16-like 1 (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000085978 ATG16L1 9606 + 2:233210051-233295674 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000347464 ATG16L1-201 233251571-233295673 protein_coding
  ENST00000373525 ATG16L1-004 233251672-233295674 protein_coding
  ENST00000392017 ATG16L1-001 233251571-233295674 protein_coding
  ENST00000392018 ATG16L1-005 233251714-233295674 protein_coding
  ENST00000392020 ATG16L1-003 233251706-233295674 protein_coding
  ENST00000392021 ATG16L1-002 233251673-233295674 nonsense_mediated_decay
  ENST00000417017 ATG16L1-013 233251705-233273739 protein_coding
  ENST00000419681 ATG16L1-006 233251676-233277594 protein_coding
  ENST00000431917 ATG16L1-012 233210051-233264920 protein_coding
  ENST00000444735 ATG16L1-007 233251670-233274738 protein_coding
  ENST00000464645 ATG16L1-017 233275379-233290348 processed_transcript
  ENST00000472242 ATG16L1-018 233277148-233282995 retained_intron
  ENST00000473865 ATG16L1-019 233290107-233294519 retained_intron
  ENST00000474148 ATG16L1-008 233251701-233295666 retained_intron
  ENST00000479942 ATG16L1-009 233251682-233295666 retained_intron
  ENST00000485623 ATG16L1-014 233251685-233264101 retained_intron
  ENST00000492298 ATG16L1-016 233274304-233281114 retained_intron
  ENST00000498620 ATG16L1-015 233265955-233289883 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373525ENST00000392017ENST00000392018ENST00000392020ENST00000392021ENST00000474148ENST00000479942
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373525 1.660±0.00 N/A N/A N/A 1.224±0.00 N/A N/A 1.345±0.00 1.722±0.00 2.543±0.00 3.240±0.00 3.206±0.00 N/A 4.965±0.00
ENST00000392017 1.296±0.00 1.906±0.00 N/A 5.963±0.00 N/A N/A 0.722±0.00 N/A 4.833±0.00 1.531±0.00 N/A 3.338±0.49 2.282±0.56 N/A
ENST00000392018 N/A N/A N/A 1.831±0.91 0.781±0.00 N/A 1.352±0.09 N/A N/A N/A 3.096±1.71 N/A N/A N/A
ENST00000392020 2.302±0.00 2.416±0.00 2.188±0.00 2.041±0.00 2.479±0.43 4.175±0.72 1.769±0.00 2.080±1.55 3.323±0.00 2.080±0.17 N/A 2.397±0.71 3.776±0.00 10.364±4.74
ENST00000392021 N/A N/A N/A N/A N/A 1.106±0.00 N/A N/A 2.212±0.00 N/A N/A 1.098±0.00 3.475±0.00 N/A
ENST00000474148 N/A N/A N/A 0.611±0.00 N/A N/A N/A N/A N/A 0.710±0.00 N/A N/A N/A N/A
ENST00000479942 N/A 1.797±0.00 N/A N/A 1.221±0.42 N/A 0.522±0.00 N/A N/A N/A N/A 1.071±0.00 0.784±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HZ CIL_0003HZ_0001 CGP 2:233059967-233295674
CIL_0004L2 CIL_0004L2_0002 CGP 2:233210051-233347055

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000045 NAS autophagic vacuole assembly
GO:0000421 IEA autophagic vacuole membrane
GO:0005515 IPI:IEA protein binding
GO:0005776 ISS autophagic vacuole
GO:0005930 ISS axoneme
GO:0015031 IEA protein transport
GO:0039689 IEA negative stranded viral RNA replication
GO:0042802 IPI identical protein binding
GO:0051260 NAS protein homooligomerization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057430 atg16l1 ATG16 autophagy related 16-like 1 (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000026289 Atg16l1 autophagy related 16-like 1 (S. cerevisiae) protein_coding Mus_musculus

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