C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: autophagy related 16-like 1 (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392017 ATG16L1-001 ENSG00000085978 9606 + 2:233251571-233295674 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainHeartLiverLungOvaryPlacentaENST00000392017
Transcript ID Adipose Adrenal Brain Heart Liver Lung Ovary Placenta
ENST00000392017 1.296±0.00 1.906±0.00 5.963±0.00 0.722±0.00 4.833±0.00 1.531±0.00 3.338±0.49 2.282±0.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HZ CIL_0003HZ_0001 CGP 2:233059967-233295674
CIL_0004L2 CIL_0004L2_0002 CGP 2:233210051-233347055

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000045 NAS autophagic vacuole assembly
GO:0000421 IEA autophagic vacuole membrane
GO:0005515 IPI:IEA protein binding
GO:0005776 ISS autophagic vacuole
GO:0005930 ISS axoneme
GO:0015031 IEA protein transport
GO:0039689 IEA negative stranded viral RNA replication
GO:0042802 IPI identical protein binding
GO:0051260 NAS protein homooligomerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027512 Atg16l1-001 protein_coding Mus_musculus 0 2329
ENSMUST00000113190 Atg16l1-002 protein_coding Mus_musculus 0 1267
ENSMUST00000113186 Atg16l1-011 protein_coding Mus_musculus 0 1266
ENSMUST00000151037 Atg16l1-003 retained_intron Mus_musculus 0 1048
ENSMUST00000137638 Atg16l1-007 retained_intron Mus_musculus 0 942
ENSMUST00000134603 Atg16l1-005 retained_intron Mus_musculus 0 745
ENSMUST00000144047 Atg16l1-008 protein_coding Mus_musculus 0 579
ENSMUST00000127884 Atg16l1-006 retained_intron Mus_musculus 0 536
ENSMUST00000129431 Atg16l1-009 retained_intron Mus_musculus 0 503
ENSMUST00000133072 Atg16l1-004 retained_intron Mus_musculus 0 488

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