C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: autophagy related 16-like 1 (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026289 Atg16l1 10090 + 1:87755870-87792428 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027512 Atg16l1-001 87756013-87792428 protein_coding
  ENSMUST00000113186 Atg16l1-011 87756076-87792422 protein_coding
  ENSMUST00000113190 Atg16l1-002 87756086-87792425 protein_coding
  ENSMUST00000127884 Atg16l1-006 87778458-87788562 retained_intron
  ENSMUST00000129431 Atg16l1-009 87766901-87775142 retained_intron
  ENSMUST00000133072 Atg16l1-004 87756056-87769400 retained_intron
  ENSMUST00000134603 Atg16l1-005 87756093-87767983 retained_intron
  ENSMUST00000137638 Atg16l1-007 87756076-87786199 retained_intron
  ENSMUST00000139628 Atg16l1-010 87775565-87778958 retained_intron
  ENSMUST00000144047 Atg16l1-008 87755870-87771398 protein_coding
  ENSMUST00000151037 Atg16l1-003 87756088-87792425 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027512ENSMUST00000113186ENSMUST00000113190ENSMUST00000127884ENSMUST00000137638ENSMUST00000144047ENSMUST00000151037
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027512 8.456±1.15 12.446±3.59 5.635±1.17 9.999±2.69 8.022±3.80 3.694±1.16 2.335±0.89 2.898±0.92 4.470±1.44 5.652±1.59 1.200±0.11 8.829±4.18 3.995±1.05 1.091±0.13
ENSMUST00000113186 4.141±0.87 4.042±0.00 7.235±1.95 6.628±2.59 3.264±0.44 4.968±1.27 1.701±0.04 5.278±0.79 6.894±2.02 4.527±1.37 1.377±0.35 6.302±2.55 8.784±1.63 1.934±0.62
ENSMUST00000113190 N/A N/A N/A 7.063±0.00 N/A N/A 6.698±0.64 N/A N/A N/A 5.393±0.99 N/A N/A N/A
ENSMUST00000127884 N/A N/A N/A N/A N/A N/A N/A N/A 1.543±0.07 N/A N/A N/A 1.938±0.00 N/A
ENSMUST00000137638 N/A 9.413±1.23 N/A N/A 4.378±0.00 2.716±0.00 N/A N/A N/A N/A N/A 8.740±2.59 N/A N/A
ENSMUST00000144047 N/A N/A N/A 25.071±0.00 N/A N/A N/A N/A N/A N/A N/A 19.749±0.00 25.975±0.15 3.695±0.00
ENSMUST00000151037 N/A N/A 2.226±0.00 3.997±0.61 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HZ CIL_0003HZ_0002 CGP 1:87620312-87792428
CIL_0004L2 CIL_0004L2_0003 CGP 1:87755870-87845158

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000045 TAS autophagic vacuole assembly
GO:0000421 IDA autophagic vacuole membrane
GO:0005515 IPI protein binding
GO:0005776 IDA autophagic vacuole
GO:0005930 IDA axoneme
GO:0015031 IEA protein transport
GO:0039689 IMP negative stranded viral RNA replication
GO:0042802 IEA identical protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057430 atg16l1 ATG16 autophagy related 16-like 1 (S. cerevisiae) protein_coding Danio_rerio
ENSG00000085978 ATG16L1 autophagy related 16-like 1 (S. cerevisiae) protein_coding Homo_sapiens

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