C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear transcription factor, X-box binding 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000086102 NFX1 9606 + 9:33290511-33371157 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000318524 NFX1-004 33290545-33348723 protein_coding
  ENST00000379521 NFX1-002 33290512-33365283 protein_coding
  ENST00000379540 NFX1-001 33290511-33371157 protein_coding
  ENST00000463421 NFX1-003 33365233-33367578 processed_transcript
  ENST00000466359 NFX1-005 33319021-33332657 processed_transcript
  ENST00000466971 NFX1-006 33342812-33351882 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000318524ENST00000379521ENST00000379540
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000318524 4.584±0.00 8.708±0.00 0.859±0.00 4.307±2.36 3.586±1.10 5.445±0.00 4.453±2.89 5.275±0.00 3.497±0.61 3.231±2.32 8.089±7.60 5.440±2.51 4.168±0.18 4.212±0.07
ENST00000379521 N/A N/A N/A N/A N/A 1.081±0.00 N/A 1.427±0.00 N/A N/A N/A N/A N/A N/A
ENST00000379540 3.210±0.00 2.333±0.00 0.931±0.00 2.454±0.92 2.689±0.76 1.576±0.26 1.160±0.62 1.275±0.10 2.246±0.00 1.883±0.35 3.831±0.00 4.892±2.33 2.305±0.91 5.096±1.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006AW CIL_0006AW_0001 CGP 9:33264879-33371157
CIL_0006AR CIL_0006AR_0001 CGP 9:33290511-33402682

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006954 TAS inflammatory response
GO:0008270 IEA zinc ion binding
GO:0016032 IEA viral process
GO:0016874 IEA ligase activity
GO:0044822 IDA poly(A) RNA binding
GO:0045347 IEA negative regulation of MHC class II biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076662 NFX1 nuclear transcription factor, X-box binding 1 protein_coding Danio_rerio
ENSMUSG00000028423 Nfx1 nuclear transcription factor, X-box binding 1 protein_coding Mus_musculus

Loading