C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear transcription factor, X-box binding 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000379540 NFX1-001 ENSG00000086102 9606 + 9:33290511-33371157 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000379540
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000379540 3.210±0.00 2.333±0.00 0.931±0.00 2.454±0.92 2.689±0.76 1.576±0.26 1.160±0.62 1.275±0.10 2.246±0.00 1.883±0.35 3.831±0.00 4.892±2.33 2.305±0.91 5.096±1.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006AW CIL_0006AW_0001 CGP 9:33264879-33371157
CIL_0006AR CIL_0006AR_0001 CGP 9:33290511-33402682

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006954 TAS inflammatory response
GO:0008270 IEA zinc ion binding
GO:0016032 IEA viral process
GO:0016874 IEA ligase activity
GO:0044822 IDA poly(A) RNA binding
GO:0045347 IEA negative regulation of MHC class II biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000098143 Nfx1-001 protein_coding Mus_musculus 0 4006
ENSMUST00000091614 Nfx1-007 protein_coding Mus_musculus 0 2719
ENSMUST00000030133 Nfx1-002 protein_coding Mus_musculus 0 2719
ENSMUST00000143798 Nfx1-004 processed_transcript Mus_musculus 0 556
ENSMUST00000124595 Nfx1-005 processed_transcript Mus_musculus 0 427

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