C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear transcription factor, X-box binding 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000318524 NFX1-004 ENSG00000086102 9606 + 9:33290545-33348723 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000318524
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000318524 4.584±0.00 8.708±0.00 0.859±0.00 4.307±2.36 3.586±1.10 5.445±0.00 4.453±2.89 5.275±0.00 3.497±0.61 3.231±2.32 8.089±7.60 5.440±2.51 4.168±0.18 4.212±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006AW CIL_0006AW_0001 CGP 9:33264879-33371157
CIL_0006AR CIL_0006AR_0001 CGP 9:33290511-33402682

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006954 TAS inflammatory response
GO:0008270 IEA zinc ion binding
GO:0016032 IEA viral process
GO:0016874 IEA ligase activity
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000091614 Nfx1-007 protein_coding Mus_musculus 0 2719
ENSMUST00000030133 Nfx1-002 protein_coding Mus_musculus 0 2719
ENSMUST00000098143 Nfx1-001 protein_coding Mus_musculus 0 2719
ENSMUST00000143798 Nfx1-004 processed_transcript Mus_musculus 0 556
ENSMUST00000124595 Nfx1-005 processed_transcript Mus_musculus 2e-20 106

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