C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear transcription factor, X-box binding 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028423 Nfx1 10090 + 4:40970906-41025993 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030133 Nfx1-002 40970906-41013871 protein_coding
  ENSMUST00000091614 Nfx1-007 40970906-41012608 protein_coding
  ENSMUST00000098143 Nfx1-001 40970906-41025993 protein_coding
  ENSMUST00000124595 Nfx1-005 41009207-41022321 processed_transcript
  ENSMUST00000131305 Nfx1-006 41023204-41024540 processed_transcript
  ENSMUST00000136717 Nfx1-003 41021366-41025178 processed_transcript
  ENSMUST00000143798 Nfx1-004 41002510-41012169 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030133ENSMUST00000091614ENSMUST00000098143ENSMUST00000124595ENSMUST00000143798
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030133 N/A N/A 3.271±0.13 6.311±1.49 N/A N/A 1.335±0.26 2.201±0.60 2.322±0.92 N/A 1.954±0.20 N/A 4.226±0.96 1.479±0.19
ENSMUST00000091614 5.681±0.02 N/A 5.228±0.23 9.281±4.45 N/A 3.865±0.63 1.484±0.24 2.057±0.16 5.277±2.84 3.068±0.46 1.995±0.36 11.870±4.67 15.876±4.79 3.215±0.54
ENSMUST00000098143 10.406±2.08 8.233±1.35 10.373±1.01 9.206±3.55 10.667±2.58 8.554±1.76 3.504±0.94 6.013±1.32 6.449±2.61 7.547±0.68 3.437±0.53 15.284±4.34 12.398±5.15 5.020±2.27
ENSMUST00000124595 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.059±0.00
ENSMUST00000143798 N/A 13.472±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006AW CIL_0006AW_0002 CGP 4:40948407-41025993
CIL_0006AR CIL_0006AR_0002 CGP 4:40970906-41048139

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0044822 IEA poly(A) RNA binding
GO:0045347 IDA negative regulation of MHC class II biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076662 NFX1 nuclear transcription factor, X-box binding 1 protein_coding Danio_rerio
ENSG00000086102 NFX1 nuclear transcription factor, X-box binding 1 protein_coding Homo_sapiens

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