C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: KH-type splicing regulatory protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000088247 KHSRP 9606 - 19:6413348-6424794 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000398148 KHSRP-001 6413348-6424794 protein_coding
  ENST00000594496 KHSRP-008 6414457-6415684 protein_coding
  ENST00000594745 KHSRP-012 6413411-6415695 protein_coding
  ENST00000595112 KHSRP-007 6417739-6421698 retained_intron
  ENST00000595223 KHSRP-005 6413965-6416812 protein_coding
  ENST00000595258 KHSRP-004 6418701-6424277 protein_coding
  ENST00000595548 KHSRP-003 6418020-6424327 protein_coding
  ENST00000597656 KHSRP-011 6413641-6415448 protein_coding
  ENST00000597704 KHSRP-006 6421001-6422357 retained_intron
  ENST00000599395 KHSRP-002 6417739-6424529 protein_coding
  ENST00000599642 KHSRP-010 6415216-6415721 retained_intron
  ENST00000600480 KHSRP-009 6414703-6415707 protein_coding
  ENST00000619396 KHSRP-201 6413430-6424775 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000398148ENST00000594496ENST00000595112ENST00000599395ENST00000619396
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000398148 14.614±0.00 N/A 0.691±0.00 2.421±0.00 6.577±0.00 7.269±3.30 0.893±0.00 4.455±3.28 N/A N/A N/A 3.813±0.00 N/A 20.050±1.66
ENST00000594496 N/A 35.244±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 4.113±0.00 N/A N/A N/A
ENST00000595112 N/A N/A 5.300±0.00 3.161±0.00 12.201±0.00 11.664±0.00 1.884±0.00 8.423±0.00 10.450±0.00 9.076±0.00 N/A 30.162±13.65 48.869±0.00 104.411±0.00
ENST00000599395 N/A N/A N/A N/A N/A N/A 1.463±0.00 N/A 4.205±0.00 2.629±0.00 4.148±0.00 37.849±0.00 49.722±0.00 48.030±0.00
ENST00000619396 N/A 24.961±0.00 N/A N/A N/A N/A 13.484±0.00 N/A 9.649±0.00 25.191±0.00 16.623±15.73 44.807±24.73 26.543±11.17 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WB CIL_0003WB_0001 CGP 19:6379569-6424794
CIL_0005GP CIL_0005GP_0002 CGP 19:6413348-6433779

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000375 TAS RNA splicing, via transesterification reactions
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0003729 IEA mRNA binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0006402 IEA mRNA catabolic process
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0010494 IEA cytoplasmic stress granule
GO:0016020 IDA membrane
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0051028 IEA mRNA transport
GO:2000628 IEA regulation of miRNA metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000026489 khsrp KH-type splicing regulatory protein protein_coding Danio_rerio
ENSMUSG00000007670 Khsrp KH-type splicing regulatory protein protein_coding Mus_musculus

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