C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: KH-type splicing regulatory protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000398148 KHSRP-001 ENSG00000088247 9606 - 19:6413348-6424794 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyOvaryTestisENST00000398148
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Ovary Testis
ENST00000398148 14.614±0.00 0.691±0.00 2.421±0.00 6.577±0.00 7.269±3.30 0.893±0.00 4.455±3.28 3.813±0.00 20.050±1.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WB CIL_0003WB_0001 CGP 19:6379569-6424794
CIL_0005GP CIL_0005GP_0002 CGP 19:6413348-6433779

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000375 TAS RNA splicing, via transesterification reactions
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0003729 IEA mRNA binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0006402 IEA mRNA catabolic process
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0010494 IEA cytoplasmic stress granule
GO:0016020 IDA membrane
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0051028 IEA mRNA transport
GO:2000628 IEA regulation of miRNA metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000007814 Khsrp-201 protein_coding Mus_musculus 0 2569
ENSMUST00000184045 Gm8602-001 processed_pseudogene Mus_musculus 0 496

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