C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003WB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000125651-ENSG00000088247 CGP 9606 19:6379569-6424794
GeneTranscriptPositionBiotype
ENSG00000088247 (KHSRP)
KH-type splicing regulatory protein 		ENST00000398148 (KHSRP-001) 6413348-6424794 protein_coding
ENST00000594496 (KHSRP-008) 6414457-6415684 protein_coding
ENST00000594745 (KHSRP-012) 6413411-6415695 protein_coding
ENST00000595112 (KHSRP-007) 6417739-6421698 retained_intron
ENST00000595223 (KHSRP-005) 6413965-6416812 protein_coding
ENST00000595258 (KHSRP-004) 6418701-6424277 protein_coding
ENST00000595548 (KHSRP-003) 6418020-6424327 protein_coding
ENST00000597656 (KHSRP-011) 6413641-6415448 protein_coding
ENST00000597704 (KHSRP-006) 6421001-6422357 retained_intron
ENST00000599395 (KHSRP-002) 6417739-6424529 protein_coding
ENST00000599642 (KHSRP-010) 6415216-6415721 retained_intron
ENST00000600480 (KHSRP-009) 6414703-6415707 protein_coding
ENST00000619396 (KHSRP-201) 6413430-6424775 protein_coding
ENSG00000125651 (GTF2F1)
general transcription factor IIF, polypeptide 1, 74kDa 		ENST00000394456 (GTF2F1-001) 6379569-6393460 protein_coding
ENST00000593678 (GTF2F1-006) 6379878-6391952 protein_coding
ENST00000594213 (GTF2F1-008) 6380190-6381820 retained_intron
ENST00000594965 (GTF2F1-007) 6380391-6381775 retained_intron
ENST00000595047 (GTF2F1-005) 6381413-6393205 protein_coding
ENST00000598607 (GTF2F1-003) 6387505-6393981 protein_coding
ENSG00000214347 (CTB-180A7.8)
 ENST00000593563 (CTB-180A7.8-002) 6393809-6411777 lincRNA
ENST00000596254 (CTB-180A7.8-001) 6396345-6412404 lincRNA
ENSG00000269444 (CTB-180A7.6)
 ENST00000599584 (CTB-180A7.6-001) 6386762-6390400 sense_overlapping
CIL_0003WB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000002658-ENSMUSG00000007670 CGP 10090 17:57003405-57031507
GeneTranscriptPositionBiotype
ENSMUSG00000002658 (Gtf2f1)
general transcription factor IIF, polypeptide 1 		ENSMUST00000002733 (Gtf2f1-201) 57003405-57011288 protein_coding
ENSMUSG00000007670 (Khsrp)
KH-type splicing regulatory protein 		ENSMUST00000007814 (Khsrp-201) 57021058-57031507 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003WB_0001ENSG00000088247ENST00000398148ENST00000594496ENST00000594745ENST00000595112ENST00000595223ENST00000595258ENST00000595548ENST00000597656ENST00000597704ENST00000599395ENST00000599642ENST00000600480ENST00000619396ENSG00000125651ENST00000394456ENST00000593678ENST00000594213ENST00000594965ENST00000595047ENST00000598607ENSG00000214347ENST00000593563ENST00000596254ENSG00000269444ENST00000599584CIL_0003WB_0002ENSMUSG00000002658ENSMUST00000002733ENSMUSG00000007670ENSMUST00000007814
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003WB_0001ENSG00000088247ENST00000398148ENST00000594496ENST00000595112ENST00000599395ENST00000619396ENSG00000125651ENST00000394456ENST00000593678ENST00000594965ENST00000595047ENST00000598607ENSG00000214347ENST00000593563ENST00000596254ENSG00000269444ENST00000599584CIL_0003WB_0002ENSMUSG00000002658ENSMUST00000002733ENSMUSG00000007670ENSMUST00000007814
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000088247 ENST00000398148 14.614±0.00 N/A 0.691±0.00 2.421±0.00 6.577±0.00 7.269±3.30 0.893±0.00 4.455±3.28 N/A N/A N/A 3.813±0.00 N/A 20.050±1.66
ENST00000594496 N/A 35.244±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 4.113±0.00 N/A N/A N/A
ENST00000594745 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000595112 N/A N/A 5.300±0.00 3.161±0.00 12.201±0.00 11.664±0.00 1.884±0.00 8.423±0.00 10.450±0.00 9.076±0.00 N/A 30.162±13.65 48.869±0.00 104.411±0.00
ENST00000595223 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000595258 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000595548 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000597656 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000597704 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000599395 N/A N/A N/A N/A N/A N/A 1.463±0.00 N/A 4.205±0.00 2.629±0.00 4.148±0.00 37.849±0.00 49.722±0.00 48.030±0.00
ENST00000599642 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000600480 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619396 N/A 24.961±0.00 N/A N/A N/A N/A 13.484±0.00 N/A 9.649±0.00 25.191±0.00 16.623±15.73 44.807±24.73 26.543±11.17 N/A
ENSG00000125651 ENST00000394456 6.674±0.00 9.912±0.00 0.314±0.00 6.804±4.98 2.965±2.32 15.088±0.00 2.354±1.63 15.828±0.00 7.614±0.00 8.050±0.00 8.124±0.00 21.055±20.56 19.682±7.06 21.584±4.84
ENST00000593678 6.067±0.00 15.802±0.00 N/A 12.051±9.90 10.504±0.00 14.488±13.97 4.242±0.00 10.270±0.00 6.731±0.00 2.441±2.17 4.611±3.73 29.929±8.02 9.205±3.19 22.429±0.00
ENST00000594213 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000594965 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.396±0.00 8.923±0.00 27.253±0.17
ENST00000595047 N/A N/A 1.407±0.00 7.031±5.18 0.957±0.00 0.761±0.00 N/A N/A N/A 1.754±0.00 2.984±0.00 N/A N/A 11.837±0.00
ENST00000598607 N/A N/A 1.461±0.00 N/A N/A N/A N/A 0.645±0.00 4.171±0.00 1.391±0.00 N/A 2.161±0.00 17.466±0.00 54.719±0.00
ENSG00000214347 ENST00000593563 0.372±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.801±0.00
ENST00000596254 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.969±0.65
ENSG00000269444 ENST00000599584 0.248±0.00 0.316±0.00 N/A 0.192±0.00 0.290±0.00 0.153±0.00 0.052±0.00 0.168±0.00 N/A N/A N/A 0.170±0.04 0.182±0.00 0.330±0.18
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000002658 ENSMUST00000002733 14.063±2.64 18.640±2.04 18.840±0.64 34.844±14.06 13.575±3.86 22.907±1.77 5.949±1.14 11.964±1.80 21.892±17.02 12.914±2.66 7.688±0.53 27.480±9.24 39.707±16.11 123.436±52.78
ENSMUSG00000007670 ENSMUST00000007814 19.047±6.82 46.867±5.46 23.176±0.72 24.470±12.25 22.669±7.70 25.180±3.44 7.579±2.40 14.382±2.86 16.002±7.30 16.701±2.62 4.735±0.84 33.939±12.48 15.079±5.96 16.111±7.26

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