C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tRNA methyltransferase 6 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000089195 TRMT6 9606 - 20:5937235-5950558 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000203001 TRMT6-001 5937833-5950536 protein_coding
  ENST00000453074 TRMT6-201 5937833-5950558 protein_coding
  ENST00000466974 TRMT6-002 5937833-5950477 processed_transcript
  ENST00000473131 TRMT6-003 5937235-5950515 processed_transcript
  ENST00000493972 TRMT6-004 5942675-5950514 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000203001ENST00000453074ENST00000466974ENST00000473131ENST00000493972
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000203001 2.568±0.00 5.523±0.00 0.320±0.00 3.934±2.58 2.350±0.52 1.152±0.68 1.993±1.42 2.219±1.36 0.598±0.01 1.612±0.00 6.923±0.00 6.824±3.55 3.594±0.26 10.446±0.80
ENST00000453074 N/A N/A N/A N/A N/A N/A N/A 1.383±0.00 1.475±0.00 0.364±0.00 N/A N/A 0.561±0.00 N/A
ENST00000466974 N/A N/A 0.311±0.00 N/A N/A N/A N/A N/A N/A 0.084±0.00 N/A N/A N/A N/A
ENST00000473131 N/A N/A N/A 0.614±0.28 0.251±0.00 N/A N/A N/A 0.183±0.00 N/A N/A 0.445±0.00 N/A N/A
ENST00000493972 1.361±0.00 N/A 0.612±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002HP CIL_0002HP_0001 CGP 20:5911430-5950558
CIL_0002W4 CIL_0002W4_0001 CGP 20:5937235-5995894

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003743 IEA translation initiation factor activity
GO:0005634 IEA nucleus
GO:0006413 IEA translational initiation
GO:0006446 IEA regulation of translational initiation
GO:0008033 IEA tRNA processing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042344 trmt6 tRNA methyltransferase 6 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000037376 Trmt6 tRNA methyltransferase 6 protein_coding Mus_musculus

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