C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tRNA methyltransferase 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037376 Trmt6 10090 - 2:132804207-132816055 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000039554 Trmt6-001 132804207-132816054 protein_coding
  ENSMUST00000127855 Trmt6-004 132811767-132816013 processed_transcript
  ENSMUST00000136897 Trmt6-006 132810442-132812507 processed_transcript
  ENSMUST00000145117 Trmt6-005 132810417-132815758 processed_transcript
  ENSMUST00000147336 Trmt6-002 132804207-132816055 processed_transcript
  ENSMUST00000152836 Trmt6-003 132804207-132810635 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039554ENSMUST00000147336ENSMUST00000152836
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039554 2.530±0.95 1.168±0.30 4.197±1.18 3.796±2.02 1.518±0.49 1.153±0.45 0.973±0.05 2.178±0.57 3.932±3.16 1.325±0.27 2.341±0.71 2.014±1.46 7.240±2.43 1.956±0.31
ENSMUST00000147336 0.614±0.00 N/A 1.332±0.00 1.620±0.38 N/A 0.999±0.00 0.277±0.00 N/A N/A 0.301±0.02 0.350±0.00 1.550±0.79 0.808±0.00 0.786±0.20
ENSMUST00000152836 0.366±0.00 0.396±0.00 N/A N/A 0.341±0.08 0.268±0.04 N/A 0.225±0.00 N/A 0.244±0.01 N/A 0.401±0.05 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002HP CIL_0002HP_0002 CGP 2:132781278-132816055
CIL_0002W4 CIL_0002W4_0002 CGP 2:132804207-132844197

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003743 IEA translation initiation factor activity
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006413 IEA translational initiation
GO:0006446 IEA regulation of translational initiation
GO:0008033 IEA tRNA processing
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042344 trmt6 tRNA methyltransferase 6 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000089195 TRMT6 tRNA methyltransferase 6 homolog (S. cerevisiae) protein_coding Homo_sapiens

Loading