C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA methyltransferase 6 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000203001 TRMT6-001 ENSG00000089195 9606 - 20:5937833-5950536 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000203001
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000203001 2.568±0.00 5.523±0.00 0.320±0.00 3.934±2.58 2.350±0.52 1.152±0.68 1.993±1.42 2.219±1.36 0.598±0.01 1.612±0.00 6.923±0.00 6.824±3.55 3.594±0.26 10.446±0.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002HP CIL_0002HP_0001 CGP 20:5911430-5950558
CIL_0002W4 CIL_0002W4_0001 CGP 20:5937235-5995894

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003743 IEA translation initiation factor activity
GO:0005634 IEA nucleus
GO:0006413 IEA translational initiation
GO:0006446 IEA regulation of translational initiation
GO:0008033 IEA tRNA processing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000039554 Trmt6-001 protein_coding Mus_musculus 0 1631
ENSMUST00000147336 Trmt6-002 processed_transcript Mus_musculus 0 963
ENSMUST00000152836 Trmt6-003 retained_intron Mus_musculus 0 436
ENSMUST00000145117 Trmt6-005 processed_transcript Mus_musculus 0 422
ENSMUST00000136897 Trmt6-006 processed_transcript Mus_musculus 0 381

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