C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trinucleotide repeat containing 6A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000395799 TNRC6A-001 ENSG00000090905 9606 + 16:24729713-24826227 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMuscleOvaryENST00000395799
Transcript ID Brain Muscle Ovary
ENST00000395799 0.890±0.00 1.015±0.00 0.758±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003V8 CIL_0003V8_0002 CGP 16:24537693-24827632
CIL_0005KT CIL_0005KT_0001 CGP 16:24729695-24911628

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0005515 IPI:IEA protein binding
GO:0005829 TAS cytosol
GO:0007173 TAS epidermal growth factor receptor signaling pathway
GO:0007219 TAS Notch signaling pathway
GO:0008543 TAS fibroblast growth factor receptor signaling pathway
GO:0009267 IEA cellular response to starvation
GO:0010467 TAS gene expression
GO:0035068 IDA micro-ribonucleoprotein complex
GO:0035278 IDA negative regulation of translation involved in gene silencing by miRNA
GO:0038095 TAS Fc-epsilon receptor signaling pathway
GO:0044822 IDA poly(A) RNA binding
GO:0045087 TAS innate immune response
GO:0048011 TAS neurotrophin TRK receptor signaling pathway
GO:0048015 TAS phosphatidylinositol-mediated signaling

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000094053 Tnrc6a-201 protein_coding Mus_musculus 0 5611
ENSDART00000113219 TNRC6A-201 protein_coding Danio_rerio 0 819

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