C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger homeobox 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000091656 ZFHX4 9606 + 8:76681219-76867285 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000458716 ZFHX4-003 76681280-76708258 retained_intron
  ENST00000517585 ZFHX4-008 76693406-76704554 protein_coding
  ENST00000517683 ZFHX4-001 76681239-76778439 processed_transcript
  ENST00000518282 ZFHX4-005 76704045-76865923 protein_coding
  ENST00000519536 ZFHX4-013 76778288-76849071 nonsense_mediated_decay
  ENST00000520307 ZFHX4-007 76682527-76704554 protein_coding
  ENST00000521891 ZFHX4-002 76681219-76867285 protein_coding
  ENST00000522409 ZFHX4-012 76849800-76850945 retained_intron
  ENST00000523625 ZFHX4-011 76778282-76849708 nonsense_mediated_decay
  ENST00000523809 ZFHX4-009 76693433-76704508 protein_coding
  ENST00000523885 ZFHX4-006 76683781-76704391 protein_coding
  ENST00000524290 ZFHX4-010 76778288-76833626 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000458716ENST00000517585ENST00000517683ENST00000518282ENST00000521891ENST00000522409ENST00000523885ENST00000524290
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000458716 N/A 0.373±0.00 0.953±0.00 1.376±0.00 N/A 0.106±0.00 N/A 3.780±0.00 N/A N/A 0.135±0.00 N/A 1.846±0.46
ENST00000517585 N/A N/A 4.645±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000517683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.065±0.00 N/A
ENST00000518282 N/A 0.142±0.00 0.225±0.00 N/A 0.328±0.00 0.067±0.00 1.040±0.00 N/A N/A 0.491±0.23 0.096±0.08 0.017±0.00 1.442±0.00
ENST00000521891 0.798±0.00 N/A 0.782±0.33 0.711±0.27 N/A 0.027±0.01 0.409±0.00 1.213±0.00 0.071±0.00 0.267±0.08 0.081±0.01 0.016±0.00 0.263±0.00
ENST00000522409 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.063±0.00 N/A
ENST00000523885 N/A N/A N/A N/A N/A N/A N/A N/A 1.127±0.00 N/A N/A N/A N/A
ENST00000524290 N/A N/A N/A N/A N/A N/A N/A N/A 1.992±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007P3 CIL_0007P3_0001 UCNEbase 8:75659355-76720446
CIL_0008DA CIL_0008DA_0001 VISTA 8:76385772-76988410
CIL_0008IW CIL_0008IW_0001 VISTA 8:76478447-77079543
CIL_0008U7 CIL_0008U7_0001 VISTA 8:76539317-77142107
CIL_0002OE CIL_0002OE_0001 CGP 8:76681219-77001044

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003779 IEA actin binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007010 IEA cytoskeleton organization
GO:0008270 IEA zinc ion binding
GO:0043565 IEA sequence-specific DNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075542 zfhx4 zinc finger homeobox 4 protein_coding Danio_rerio
ENSMUSG00000025255 Zfhx4 zinc finger homeodomain 4 protein_coding Mus_musculus

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