C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002OE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000091656-ENSG00000164751 CGP 9606 8:76681219-77001044
GeneTranscriptPositionBiotype
ENSG00000091656 (ZFHX4)
zinc finger homeobox 4 		ENST00000458716 (ZFHX4-003) 76681280-76708258 retained_intron
ENST00000517585 (ZFHX4-008) 76693406-76704554 protein_coding
ENST00000517683 (ZFHX4-001) 76681239-76778439 processed_transcript
ENST00000518282 (ZFHX4-005) 76704045-76865923 protein_coding
ENST00000519536 (ZFHX4-013) 76778288-76849071 nonsense_mediated_decay
ENST00000520307 (ZFHX4-007) 76682527-76704554 protein_coding
ENST00000521891 (ZFHX4-002) 76681219-76867285 protein_coding
ENST00000522409 (ZFHX4-012) 76849800-76850945 retained_intron
ENST00000523625 (ZFHX4-011) 76778282-76849708 nonsense_mediated_decay
ENST00000523809 (ZFHX4-009) 76693433-76704508 protein_coding
ENST00000523885 (ZFHX4-006) 76683781-76704391 protein_coding
ENST00000524290 (ZFHX4-010) 76778288-76833626 retained_intron
ENSG00000164751 (PEX2)
peroxisomal biogenesis factor 2 		ENST00000357039 (PEX2-001) 76980258-77000226 protein_coding
ENST00000518986 (PEX2-006) 76983640-76986527 protein_coding
ENST00000519956 (PEX2-004) 76984170-77001044 protein_coding
ENST00000520103 (PEX2-003) 76982934-77000947 protein_coding
ENST00000520203 (PEX2-005) 76987892-77000230 processed_transcript
ENST00000522527 (PEX2-002) 76982957-77000267 protein_coding
ENSG00000253416 (RP11-48D4.2)
 ENST00000519660 (RP11-48D4.2-001) 76904591-76913399 lincRNA
ENSG00000253661 (ZFHX4-AS1)
ZFHX4 antisense RNA 1 		ENST00000518143 (ZFHX4-AS1-001) 76610881-76683278 antisense
ENST00000521894 (ZFHX4-AS1-003) 76611376-76615321 antisense
ENST00000522357 (ZFHX4-AS1-004) 76611674-76615028 antisense
ENST00000522961 (ZFHX4-AS1-005) 76491200-76683156 antisense
ENST00000523977 (ZFHX4-AS1-002) 76615192-76616441 antisense
ENSG00000266712 (hsa-mir-3149)
hsa-mir-3149 		ENST00000584629 (hsa-mir-3149.1-201) 76966759-76966870 miRNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_0002OE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025255-ENSMUSG00000040374 CGP 10090 3:5218526-5576239
GeneTranscriptPositionBiotype
ENSMUSG00000025255 (Zfhx4)
zinc finger homeodomain 4 		ENSMUST00000026284 (Zfhx4-201) 5218554-5415855 protein_coding
ENSMUST00000175641 (Zfhx4-004) 5218546-5331246 retained_intron
ENSMUST00000175866 (Zfhx4-002) 5218526-5413165 protein_coding
ENSMUST00000176175 (Zfhx4-005) 5221505-5242018 protein_coding
ENSMUST00000176383 (Zfhx4-001) 5241672-5415857 protein_coding
ENSMUSG00000040374 (Pex2)
peroxisomal biogenesis factor 2 		ENSMUST00000059021 (Pex2-201) 5560188-5576239 protein_coding
ENSMUST00000071280 (Pex2-202) 5560188-5576150 protein_coding
ENSMUST00000164828 (Pex2-203) 5560188-5576150 protein_coding
ENSMUST00000165309 (Pex2-204) 5560188-5576150 protein_coding
ENSMUSG00000086224 (2700069I18Rik)
RIKEN cDNA 2700069I18 gene 		ENSMUST00000128815 (2700069I18Rik-001) 5177586-5220823 antisense
ENSMUST00000177440 (2700069I18Rik-002) 5178980-5220841 antisense
ENSMUSG00000093557 (4930555M17Rik)
RIKEN cDNA 4930555M17 gene 		ENSMUST00000176666 (4930555M17Rik-001) 5512995-5515333 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002OE_0001ENSG00000091656ENST00000458716ENST00000517585ENST00000517683ENST00000518282ENST00000519536ENST00000520307ENST00000521891ENST00000522409ENST00000523625ENST00000523809ENST00000523885ENST00000524290ENSG00000164751ENST00000357039ENST00000518986ENST00000519956ENST00000520103ENST00000520203ENST00000522527ENSG00000253416ENST00000519660ENSG00000253661ENST00000518143ENST00000521894ENST00000522357ENST00000522961ENST00000523977ENSG00000266712ENST00000584629CIL_0002OE_0002ENSMUSG00000025255ENSMUST00000026284ENSMUST00000175641ENSMUST00000175866ENSMUST00000176175ENSMUST00000176383ENSMUSG00000040374ENSMUST00000059021ENSMUST00000071280ENSMUST00000164828ENSMUST00000165309ENSMUSG00000086224ENSMUST00000128815ENSMUST00000177440ENSMUSG00000093557ENSMUST00000176666
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002OE_0001ENSG00000091656ENST00000458716ENST00000517585ENST00000517683ENST00000518282ENST00000521891ENST00000522409ENST00000523885ENST00000524290ENSG00000164751ENST00000357039ENST00000518986ENST00000519956ENST00000520103ENST00000522527ENSG00000253416ENST00000519660ENSG00000253661ENST00000518143ENST00000521894ENST00000522961ENST00000523977ENSG00000266712ENST00000584629CIL_0002OE_0002ENSMUSG00000025255ENSMUST00000026284ENSMUST00000175866ENSMUST00000176383ENSMUSG00000040374ENSMUST00000059021ENSMUST00000071280ENSMUST00000164828ENSMUST00000165309ENSMUSG00000086224ENSMUST00000128815ENSMUST00000177440ENSMUSG00000093557ENSMUST00000176666
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000091656 ENST00000458716 N/A N/A 0.373±0.00 0.953±0.00 1.376±0.00 N/A 0.106±0.00 N/A 3.780±0.00 N/A N/A 0.135±0.00 N/A 1.846±0.46
ENST00000517585 N/A N/A N/A 4.645±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000517683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.065±0.00 N/A
ENST00000518282 N/A N/A 0.142±0.00 0.225±0.00 N/A 0.328±0.00 0.067±0.00 1.040±0.00 N/A N/A 0.491±0.23 0.096±0.08 0.017±0.00 1.442±0.00
ENST00000519536 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520307 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521891 0.798±0.00 N/A N/A 0.782±0.33 0.711±0.27 N/A 0.027±0.01 0.409±0.00 1.213±0.00 0.071±0.00 0.267±0.08 0.081±0.01 0.016±0.00 0.263±0.00
ENST00000522409 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.063±0.00 N/A
ENST00000523625 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523809 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523885 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.127±0.00 N/A N/A N/A N/A
ENST00000524290 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.992±0.00 N/A N/A N/A N/A
ENSG00000164751 ENST00000357039 0.882±0.00 1.396±0.00 N/A 1.249±0.00 1.363±0.03 0.807±0.07 0.677±0.30 1.629±0.18 0.851±0.00 0.913±0.00 0.829±0.00 1.076±0.20 0.929±0.04 0.975±0.30
ENST00000518986 2.756±0.00 N/A 1.068±0.00 4.806±2.41 4.424±0.00 3.986±0.00 N/A 3.364±1.48 2.659±0.00 N/A 3.058±1.02 6.302±2.61 7.708±0.00 7.017±0.00
ENST00000519956 N/A N/A N/A N/A N/A N/A 3.827±0.00 N/A 6.869±0.00 7.001±0.00 N/A 10.134±2.73 8.396±0.00 9.598±0.00
ENST00000520103 3.309±0.00 6.585±0.00 N/A 6.021±0.00 3.927±0.00 2.250±0.00 N/A 4.799±0.00 N/A N/A 2.251±0.00 2.097±0.00 2.527±0.00 3.064±0.00
ENST00000520203 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522527 2.323±0.00 1.800±0.00 1.308±0.00 2.339±0.54 5.032±0.00 1.497±0.00 2.290±0.01 1.945±0.57 N/A 3.120±0.40 2.275±0.19 3.741±0.08 4.129±1.56 1.259±0.00
ENSG00000253416 ENST00000519660 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.046±0.00
ENSG00000253661 ENST00000518143 0.152±0.00 0.006±0.00 N/A 0.548±0.30 0.199±0.09 0.114±0.06 N/A N/A N/A N/A 0.135±0.00 0.039±0.00 N/A 0.098±0.02
ENST00000521894 N/A N/A N/A 0.258±0.00 0.116±0.00 N/A 0.066±0.00 N/A 0.066±0.00 N/A N/A N/A N/A N/A
ENST00000522357 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522961 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.740±0.00
ENST00000523977 N/A N/A N/A N/A 1.265±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.190±0.07
ENSG00000266712 ENST00000584629 N/A N/A N/A 0.897±0.00 0.486±0.00 N/A 0.119±0.00 N/A N/A N/A N/A N/A N/A 0.461±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025255 ENSMUST00000026284 0.121±0.00 0.524±0.14 0.140±0.06 1.022±0.37 N/A N/A 0.089±0.00 N/A 0.119±0.04 N/A 0.151±0.00 0.592±0.12 0.051±0.00 0.030±0.00
ENSMUST00000175641 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175866 0.077±0.04 0.409±0.16 N/A N/A 0.594±0.23 0.102±0.02 0.103±0.00 0.020±0.00 0.301±0.13 0.077±0.03 N/A 0.509±0.16 0.009±0.00 0.109±0.03
ENSMUST00000176175 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176383 0.155±0.05 0.583±0.27 N/A 8.144±6.81 0.707±0.15 0.271±0.03 0.076±0.00 0.062±0.02 0.340±0.23 0.150±0.07 0.404±0.16 0.647±0.31 0.017±0.01 0.036±0.01
ENSMUSG00000040374 ENSMUST00000059021 4.896±1.21 17.507±1.97 3.695±0.35 4.299±1.40 6.641±3.06 8.899±3.59 5.142±0.46 6.930±3.22 5.513±2.09 8.014±0.98 3.193±0.00 7.415±2.77 3.844±2.87 1.395±0.44
ENSMUST00000071280 N/A N/A N/A 0.774±0.00 N/A N/A 0.967±0.00 N/A N/A N/A 1.553±0.31 1.332±0.00 1.173±0.25 0.207±0.00
ENSMUST00000164828 2.044±0.17 N/A 4.124±1.15 3.066±0.10 2.261±1.53 1.919±0.50 1.499±0.00 3.599±1.09 2.650±1.02 1.853±0.50 3.863±0.00 3.873±2.56 4.110±0.88 1.042±0.19
ENSMUST00000165309 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.938±0.20 N/A
ENSMUSG00000086224 ENSMUST00000128815 0.042±0.00 0.190±0.00 0.039±0.02 2.673±2.41 0.144±0.05 N/A 0.038±0.00 N/A 0.227±0.06 0.061±0.00 0.077±0.03 0.069±0.00 0.066±0.03 N/A
ENSMUST00000177440 N/A 0.322±0.00 0.049±0.00 2.632±0.00 0.361±0.14 N/A N/A N/A 0.204±0.05 N/A 0.245±0.00 0.763±0.30 N/A 0.397±0.00
ENSMUSG00000093557 ENSMUST00000176666 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.081±0.76

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