C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger homeodomain 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025255 Zfhx4 10090 + 3:5218526-5415857 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026284 Zfhx4-201 5218554-5415855 protein_coding
  ENSMUST00000175641 Zfhx4-004 5218546-5331246 retained_intron
  ENSMUST00000175866 Zfhx4-002 5218526-5413165 protein_coding
  ENSMUST00000176175 Zfhx4-005 5221505-5242018 protein_coding
  ENSMUST00000176383 Zfhx4-001 5241672-5415857 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026284ENSMUST00000175866ENSMUST00000176383
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026284 0.121±0.00 0.524±0.14 0.140±0.06 1.022±0.37 N/A N/A 0.089±0.00 N/A 0.119±0.04 N/A 0.151±0.00 0.592±0.12 0.051±0.00 0.030±0.00
ENSMUST00000175866 0.077±0.04 0.409±0.16 N/A N/A 0.594±0.23 0.102±0.02 0.103±0.00 0.020±0.00 0.301±0.13 0.077±0.03 N/A 0.509±0.16 0.009±0.00 0.109±0.03
ENSMUST00000176383 0.155±0.05 0.583±0.27 N/A 8.144±6.81 0.707±0.15 0.271±0.03 0.076±0.00 0.062±0.02 0.340±0.23 0.150±0.07 0.404±0.16 0.647±0.31 0.017±0.01 0.036±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007P3 CIL_0007P3_0004 UCNEbase 3:3760514-6887688
CIL_0008DA CIL_0008DA_0002 VISTA 3:4923534-5526222
CIL_0008IW CIL_0008IW_0002 VISTA 3:5029674-5630756
CIL_0008U7 CIL_0008U7_0002 VISTA 3:5087050-5689713
CIL_0002OE CIL_0002OE_0002 CGP 3:5218526-5576239

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075542 zfhx4 zinc finger homeobox 4 protein_coding Danio_rerio
ENSG00000091656 ZFHX4 zinc finger homeobox 4 protein_coding Homo_sapiens

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