C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger homeobox 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000521891 ZFHX4-002 ENSG00000091656 9606 + 8:76681219-76867285 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000521891
Transcript ID Adipose Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000521891 0.798±0.00 0.782±0.33 0.711±0.27 0.027±0.01 0.409±0.00 1.213±0.00 0.071±0.00 0.267±0.08 0.081±0.01 0.016±0.00 0.263±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007P3 CIL_0007P3_0001 UCNEbase 8:75659355-76720446
CIL_0008DA CIL_0008DA_0001 VISTA 8:76385772-76988410
CIL_0008IW CIL_0008IW_0001 VISTA 8:76478447-77079543
CIL_0008U7 CIL_0008U7_0001 VISTA 8:76539317-77142107
CIL_0002OE CIL_0002OE_0001 CGP 8:76681219-77001044

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003779 IEA actin binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007010 IEA cytoskeleton organization
GO:0008270 IEA zinc ion binding
GO:0043565 IEA sequence-specific DNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000175866 Zfhx4-002 protein_coding Mus_musculus 0 14160
ENSMUST00000176383 Zfhx4-001 protein_coding Mus_musculus 0 13610
ENSMUST00000026284 Zfhx4-201 protein_coding Mus_musculus 0 13600
ENSDART00000112256 zfhx4-201 protein_coding Danio_rerio 0 1652
ENSDART00000135846 zfhx4-001 protein_coding Danio_rerio 0 1652
ENSMUST00000175641 Zfhx4-004 retained_intron Mus_musculus 0 640
ENSMUST00000176175 Zfhx4-005 protein_coding Mus_musculus 0 590
ENSDART00000114582 zfhx3-001 protein_coding Danio_rerio 0 274
ENSMUST00000043896 Zfhx3-001 protein_coding Mus_musculus 0 228

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