C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TOX high mobility group box family member 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000092203 TOX4 9606 + 14:21476597-21499175 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000416256 TOX4-011 21476597-21488850 protein_coding
  ENST00000447695 TOX4-004 21477224-21488789 nonsense_mediated_decay
  ENST00000448790 TOX4-201 21477176-21499171 protein_coding
  ENST00000455138 TOX4-007 21477238-21488751 nonsense_mediated_decay
  ENST00000455393 TOX4-003 21477203-21496755 nonsense_mediated_decay
  ENST00000457430 TOX4-005 21477224-21488850 protein_coding
  ENST00000463119 TOX4-010 21492097-21492812 retained_intron
  ENST00000473176 TOX4-009 21488558-21492606 retained_intron
  ENST00000487242 TOX4-008 21477264-21487693 retained_intron
  ENST00000494242 TOX4-006 21477233-21488708 processed_transcript
  ENST00000613005 TOX4-002 21477182-21496227 retained_intron
  ENST00000613569 TOX4-001 21476755-21499175 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000448790ENST00000455393ENST00000473176ENST00000613005ENST00000613569
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000448790 12.669±0.00 11.332±0.00 N/A 7.966±4.55 9.008±0.00 6.272±1.12 5.028±2.57 4.808±2.83 3.014±0.26 5.190±0.56 19.586±0.00 6.878±2.46 7.186±0.86 11.055±0.72
ENST00000455393 18.231±0.00 N/A N/A N/A 12.033±0.00 12.178±0.00 9.366±0.00 6.274±2.51 5.450±1.44 10.271±0.00 13.057±8.09 11.253±2.57 16.572±1.49 21.897±1.28
ENST00000473176 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.052±0.00 N/A N/A N/A
ENST00000613005 N/A N/A 1.334±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.383±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003JD CIL_0003JD_0001 CGP 14:21385194-21476973
CIL_0008CX CIL_0008CX_0001 VISTA 14:21403052-22005074
CIL_0005QL CIL_0005QL_0001 CGP 14:21459020-21499175
CIL_0002HL CIL_0002HL_0001 CGP 14:21476597-21511375

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000785 IDA chromatin
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0072357 IDA PTW/PP1 phosphatase complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002031 tox4 TOX high mobility group box family member 4 protein_coding Danio_rerio
ENSDARG00000063420 TOX4 (2 of 2) TOX high mobility group box family member 4 protein_coding Danio_rerio
ENSMUSG00000016831 Tox4 TOX high mobility group box family member 4 protein_coding Mus_musculus

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