C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TOX high mobility group box family member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000448790 TOX4-201 ENSG00000092203 9606 + 14:21477176-21499171 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000448790
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000448790 12.669±0.00 11.332±0.00 7.966±4.55 9.008±0.00 6.272±1.12 5.028±2.57 4.808±2.83 3.014±0.26 5.190±0.56 19.586±0.00 6.878±2.46 7.186±0.86 11.055±0.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003JD CIL_0003JD_0001 CGP 14:21385194-21476973
CIL_0008CX CIL_0008CX_0001 VISTA 14:21403052-22005074
CIL_0005QL CIL_0005QL_0001 CGP 14:21459020-21499175
CIL_0002HL CIL_0002HL_0001 CGP 14:21476597-21511375

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000785 IDA chromatin
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0072357 IDA PTW/PP1 phosphatase complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022766 Tox4-001 protein_coding Mus_musculus 0 2453
ENSMUST00000071842 Gm5828-001 processed_pseudogene Mus_musculus 0 2163
ENSMUST00000152493 Tox4-002 retained_intron Mus_musculus 0 1170
ENSMUST00000137753 Tox4-003 retained_intron Mus_musculus 0 933
ENSMUST00000173361 Tox4-005 processed_transcript Mus_musculus 0 342
ENSMUST00000130550 Mettl3-008 retained_intron Mus_musculus 0 193
ENSMUST00000147768 Mettl3-002 nonsense_mediated_decay Mus_musculus 0 193
ENSMUST00000173656 Mettl3-011 protein_coding Mus_musculus 0 193
ENSMUST00000174360 Mettl3-013 protein_coding Mus_musculus 0 191
ENSMUST00000173546 Mettl3-010 retained_intron Mus_musculus 0 191
ENSMUST00000174351 Mettl3-012 nonsense_mediated_decay Mus_musculus 0 191
ENSMUST00000022767 Mettl3-001 protein_coding Mus_musculus 0 191
ENSMUST00000153539 Mettl3-003 nonsense_mediated_decay Mus_musculus 0 191
ENSMUST00000172655 Tox4-004 retained_intron Mus_musculus 3e-29 135

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