C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003JD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100888-ENSG00000129472 CGP 9606 14:21385194-21476973
GeneTranscriptPositionBiotype
ENSG00000100888 (CHD8)
chromodomain helicase DNA binding protein 8 		ENST00000399982 (CHD8-201) 21385195-21431708 protein_coding
ENST00000430710 (CHD8-001) 21385194-21437243 protein_coding
ENST00000553283 (CHD8-007) 21429137-21437244 protein_coding
ENST00000553622 (CHD8-003) 21431115-21437265 protein_coding
ENST00000553651 (CHD8-006) 21431738-21437298 processed_transcript
ENST00000553870 (CHD8-012) 21386011-21392788 protein_coding
ENST00000554384 (CHD8-010) 21408323-21413006 retained_intron
ENST00000555301 (CHD8-011) 21393671-21395014 retained_intron
ENST00000555935 (CHD8-004) 21399606-21409890 protein_coding
ENST00000555962 (CHD8-008) 21395024-21437230 processed_transcript
ENST00000556833 (CHD8-013) 21431733-21456126 processed_transcript
ENST00000557329 (CHD8-009) 21394109-21394767 retained_intron
ENST00000557364 (CHD8-002) 21385486-21456080 protein_coding
ENST00000557727 (CHD8-005) 21385199-21386344 retained_intron
ENSG00000129472 (RAB2B)
RAB2B, member RAS oncogene family 		ENST00000397762 (RAB2B-001) 21459020-21476973 protein_coding
ENST00000417141 (RAB2B-007) 21461198-21476958 nonsense_mediated_decay
ENST00000461909 (RAB2B-006) 21461245-21476673 processed_transcript
ENST00000475857 (RAB2B-004) 21474520-21476960 processed_transcript
ENST00000485996 (RAB2B-005) 21476267-21476936 processed_transcript
ENST00000622293 (RAB2B-201) 21459027-21476934 protein_coding
ENSG00000199436 (SNORD9)
small nucleolar RNA, C/D box 9 		ENST00000362566 (SNORD9-201) 21392150-21392253 snoRNA
ENSG00000200785 (SNORD8)
small nucleolar RNA, C/D box 8 		ENST00000363915 (SNORD8-201) 21397292-21397401 snoRNA
ENSG00000241035 (RP11-689J19.1)
 ENST00000480068 (RP11-689J19.1-001) 21398925-21399282 processed_pseudogene
ENSG00000258870 (EIF4EBP1P1)
eukaryotic translation initiation factor 4E binding protein 1 pseudogene 1 		ENST00000557776 (EIF4EBP1P1-001) 21419620-21419960 processed_pseudogene
ENSG00000274475 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000619902 (Metazoa_SRP.1-281) 21429508-21429806 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0003JD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000053754-ENSMUSG00000022159 CGP 10090 14:52198151-52279545
GeneTranscriptPositionBiotype
ENSMUSG00000016831 (Tox4)
TOX high mobility group box family member 4 		ENSMUST00000022766 (Tox4-001) 52279146-52296391 protein_coding
ENSMUST00000137753 (Tox4-003) 52279732-52287347 retained_intron
ENSMUST00000152493 (Tox4-002) 52279565-52292357 retained_intron
ENSMUST00000172655 (Tox4-004) 52279617-52280124 retained_intron
ENSMUST00000173361 (Tox4-005) 52285734-52286970 processed_transcript
ENSMUSG00000022159 (Rab2b)
RAB2B, member RAS oncogene family 		ENSMUST00000022765 (Rab2b-001) 52261759-52279545 protein_coding
ENSMUST00000100631 (Rab2b-004) 52261771-52279339 protein_coding
ENSMUST00000167116 (Rab2b-002) 52261766-52279298 protein_coding
ENSMUST00000172488 (Rab2b-008) 52263710-52279241 nonsense_mediated_decay
ENSMUST00000172634 (Rab2b-009) 52264750-52275489 nonsense_mediated_decay
ENSMUST00000173046 (Rab2b-007) 52263710-52278674 processed_transcript
ENSMUST00000174020 (Rab2b-006) 52263710-52279241 nonsense_mediated_decay
ENSMUST00000174585 (Rab2b-003) 52261769-52269106 retained_intron
ENSMUSG00000053754 (Chd8)
chromodomain helicase DNA binding protein 8 		ENSMUST00000089752 (Chd8-001) 52198151-52237572 protein_coding
ENSMUST00000122823 (Chd8-008) 52212800-52214236 retained_intron
ENSMUST00000134329 (Chd8-003) 52203725-52207556 retained_intron
ENSMUST00000136528 (Chd8-011) 52205741-52207703 retained_intron
ENSMUST00000140603 (Chd8-009) 52211848-52213379 protein_coding
ENSMUST00000145404 (Chd8-010) 52207836-52213023 retained_intron
ENSMUST00000147309 (Chd8-005) 52199766-52204627 retained_intron
ENSMUST00000147827 (Chd8-004) 52198476-52206097 retained_intron
ENSMUST00000149694 (Chd8-006) 52222599-52227597 processed_transcript
ENSMUST00000149975 (Chd8-002) 52198451-52237791 protein_coding
ENSMUST00000155614 (Chd8-007) 52214957-52215926 retained_intron
ENSMUSG00000093044 (Snord8)
small nucleolar RNA, C/D box 8 		ENSMUST00000175303 (Snord8-201) 52209785-52209894 snoRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003JD_0001ENSG00000100888ENST00000399982ENST00000430710ENST00000553283ENST00000553622ENST00000553651ENST00000553870ENST00000554384ENST00000555301ENST00000555935ENST00000555962ENST00000556833ENST00000557329ENST00000557364ENST00000557727ENSG00000129472ENST00000397762ENST00000417141ENST00000461909ENST00000475857ENST00000485996ENST00000622293ENSG00000199436ENST00000362566ENSG00000200785ENST00000363915ENSG00000241035ENST00000480068ENSG00000258870ENST00000557776ENSG00000274475ENST00000619902CIL_0003JD_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003JD_0001ENSG00000100888ENST00000399982ENST00000430710ENST00000553870ENST00000557364ENST00000557727ENSG00000129472ENST00000397762ENST00000622293ENSG00000199436ENST00000362566ENSG00000200785ENST00000363915ENSG00000241035ENST00000480068ENSG00000258870ENST00000557776ENSG00000274475ENST00000619902CIL_0003JD_0002ENSMUSG00000016831ENSMUST00000022766ENSMUST00000152493ENSMUSG00000022159ENSMUST00000022765ENSMUSG00000053754ENSMUST00000089752ENSMUST00000147827ENSMUST00000149975ENSMUSG00000093044ENSMUST00000175303
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100888 ENST00000399982 2.598±0.00 1.386±0.00 N/A 1.400±0.72 0.831±0.00 1.002±0.00 1.981±0.00 2.504±0.00 0.846±0.31 1.411±0.14 3.066±0.00 1.865±0.59 1.294±0.11 3.174±0.00
ENST00000430710 4.125±0.00 3.774±0.00 N/A 4.993±0.00 2.658±0.01 1.662±0.81 0.727±0.19 1.366±0.00 1.282±0.49 1.554±0.00 N/A 3.316±2.20 2.469±1.71 6.679±1.68
ENST00000553283 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553622 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553651 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553870 N/A 16.504±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555301 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555935 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555962 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556833 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557364 N/A N/A 1.261±0.00 3.207±0.00 2.416±1.42 1.711±0.00 N/A 1.650±0.00 1.500±0.99 4.046±0.00 1.392±0.44 2.561±1.18 0.949±0.21 4.418±0.00
ENST00000557727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.447±0.00 N/A N/A
ENSG00000129472 ENST00000397762 N/A 10.528±0.00 2.064±0.00 8.462±2.01 6.537±0.29 N/A 3.379±0.81 N/A 2.929±0.00 3.966±0.00 N/A 7.160±1.00 N/A 9.517±0.00
ENST00000417141 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461909 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475857 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485996 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622293 N/A N/A N/A 7.018±0.00 N/A 6.220±0.00 N/A N/A 5.397±0.00 4.126±0.00 N/A N/A N/A N/A
ENSG00000199436 ENST00000362566 N/A 0.852±0.00 1001.090±0.00 425.835±425.61 1469.550±0.00 1185.750±0.00 222.286±221.45 895.514±0.00 3094.870±0.00 1702.670±0.00 N/A 2873.430±0.00 N/A N/A
ENSG00000200785 ENST00000363915 N/A N/A 5139.900±0.00 3560.890±0.00 11538.300±0.00 9448.480±0.00 6369.910±0.00 5611.680±0.00 21245.199±0.00 8880.790±0.00 1894.160±0.00 18860.699±0.00 N/A N/A
ENSG00000241035 ENST00000480068 N/A 0.189±0.00 N/A N/A 0.961±0.00 N/A N/A N/A N/A N/A N/A 0.133±0.00 N/A N/A
ENSG00000258870 ENST00000557776 N/A 0.218±0.00 N/A 0.086±0.00 0.404±0.00 0.399±0.00 0.068±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000274475 ENST00000619902 N/A 0.384±0.00 N/A 0.714±0.00 2.049±0.00 N/A 0.061±0.00 0.329±0.00 N/A 0.617±0.00 N/A N/A N/A 0.158±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000016831 ENSMUST00000022766 10.107±4.79 9.713±2.36 12.247±0.32 14.381±3.52 11.960±5.66 9.056±2.41 6.525±1.14 9.370±1.94 7.670±2.32 12.073±3.55 8.996±2.12 10.742±4.84 10.511±2.79 12.489±3.84
ENSMUST00000137753 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152493 10.830±5.05 23.808±2.48 N/A N/A N/A 10.666±2.07 5.540±0.78 7.514±1.07 7.747±0.71 16.391±2.57 N/A 25.504±10.10 N/A 8.767±1.60
ENSMUST00000172655 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173361 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000022159 ENSMUST00000022765 8.060±1.01 11.551±1.36 8.078±0.07 21.736±1.74 N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.538±2.82
ENSMUST00000100631 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000167116 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172488 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173046 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174020 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174585 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000053754 ENSMUST00000089752 5.661±1.95 4.589±1.12 3.382±1.19 7.535±3.33 7.306±1.17 4.843±0.38 2.049±0.78 3.047±0.53 2.443±1.12 7.295±0.32 1.162±0.45 6.801±1.93 4.506±1.23 3.453±0.93
ENSMUST00000122823 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136528 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140603 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145404 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147309 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147827 3.296±0.99 7.997±3.46 4.597±0.88 5.745±1.15 6.034±3.16 3.607±0.54 N/A 2.626±0.92 2.149±0.52 5.576±2.23 N/A 8.130±3.48 2.769±0.28 2.472±0.15
ENSMUST00000149694 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149975 N/A N/A 3.674±1.01 5.710±4.68 N/A N/A N/A N/A 0.833±0.24 N/A 1.418±0.34 6.958±3.72 6.470±5.24 5.527±0.00
ENSMUST00000155614 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000093044 ENSMUST00000175303 N/A 2067.940±48.88 N/A N/A N/A N/A N/A N/A N/A N/A N/A 70.090±52.99 33.547±0.00 N/A

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