C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TOX high mobility group box family member 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000016831 Tox4 10090 + 14:52279146-52296391 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000022766 Tox4-001 52279146-52296391 protein_coding
  ENSMUST00000137753 Tox4-003 52279732-52287347 retained_intron
  ENSMUST00000152493 Tox4-002 52279565-52292357 retained_intron
  ENSMUST00000172655 Tox4-004 52279617-52280124 retained_intron
  ENSMUST00000173361 Tox4-005 52285734-52286970 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022766ENSMUST00000152493
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022766 10.107±4.79 9.713±2.36 12.247±0.32 14.381±3.52 11.960±5.66 9.056±2.41 6.525±1.14 9.370±1.94 7.670±2.32 12.073±3.55 8.996±2.12 10.742±4.84 10.511±2.79 12.489±3.84
ENSMUST00000152493 10.830±5.05 23.808±2.48 N/A N/A N/A 10.666±2.07 5.540±0.78 7.514±1.07 7.747±0.71 16.391±2.57 N/A 25.504±10.10 N/A 8.767±1.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003JD CIL_0003JD_0002 CGP 14:52198151-52279545
CIL_0008CX CIL_0008CX_0002 VISTA 14:52247406-52849170
CIL_0005QL CIL_0005QL_0002 CGP 14:52261759-52296391
CIL_0002HL CIL_0002HL_0002 CGP 14:52279146-52305128

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000785 ISS chromatin
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0072357 ISS PTW/PP1 phosphatase complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002031 tox4 TOX high mobility group box family member 4 protein_coding Danio_rerio
ENSDARG00000063420 TOX4 (2 of 2) TOX high mobility group box family member 4 protein_coding Danio_rerio
ENSG00000092203 TOX4 TOX high mobility group box family member 4 protein_coding Homo_sapiens

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