C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SEC22 vesicle trafficking protein homolog C (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000093183 SEC22C 9606 - 3:42547969-42601080 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264454 SEC22C-002 42552924-42581962 protein_coding
  ENST00000273156 SEC22C-001 42547971-42582028 protein_coding
  ENST00000383750 SEC22C-009 42561117-42581951 nonsense_mediated_decay
  ENST00000416880 SEC22C-013 42563547-42581960 protein_coding
  ENST00000417572 SEC22C-005 42548004-42601080 protein_coding
  ENST00000420163 SEC22C-015 42563845-42581943 protein_coding
  ENST00000423701 SEC22C-004 42547969-42581942 protein_coding
  ENST00000445388 SEC22C-011 42563524-42581987 nonsense_mediated_decay
  ENST00000449617 SEC22C-006 42548183-42581962 nonsense_mediated_decay
  ENST00000450981 SEC22C-010 42561215-42600524 protein_coding
  ENST00000451653 SEC22C-003 42547969-42563632 protein_coding
  ENST00000454141 SEC22C-012 42563545-42581950 nonsense_mediated_decay
  ENST00000456222 SEC22C-016 42563927-42582023 processed_transcript
  ENST00000456515 SEC22C-008 42555931-42582327 protein_coding
  ENST00000487701 SEC22C-014 42563609-42564415 retained_intron
  ENST00000493107 SEC22C-007 42561115-42581901 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000273156ENST00000451653
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000273156 12.040±0.00 N/A 18.079±0.00 N/A 8.501±0.00 N/A N/A N/A N/A 15.794±0.00 9.117±1.48 13.634±0.00
ENST00000451653 3.232±0.00 6.138±0.00 4.843±0.27 5.328±0.00 2.397±0.00 3.040±0.82 4.582±0.00 1.230±0.00 1.162±0.37 4.743±0.95 1.516±0.17 3.854±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000480 CIL_000480_0001 CGP 3:42489299-42601080
CIL_00047Z CIL_00047Z_0001 CGP 3:42547969-42601080

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005783 IEA endoplasmic reticulum
GO:0006810 IEA transport
GO:0006888 TAS ER to Golgi vesicle-mediated transport
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063387 sec22c SEC22 vesicle trafficking protein homolog C (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000061536 Sec22c SEC22 vesicle trafficking protein homolog C (S. cerevisiae) protein_coding Mus_musculus

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