C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SEC22 vesicle trafficking protein homolog C (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000061536 Sec22c 10090 - 9:121680047-121705490 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000078547 Sec22c-201 121680047-121705029 protein_coding
  ENSMUST00000111560 Sec22c-001 121683022-121705465 protein_coding
  ENSMUST00000132733 Sec22c-004 121688198-121690473 retained_intron
  ENSMUST00000139193 Sec22c-003 121684551-121704979 nonsense_mediated_decay
  ENSMUST00000154978 Sec22c-002 121695616-121705490 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000078547ENSMUST00000111560ENSMUST00000139193
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000078547 1.815±0.79 3.003±0.44 1.592±0.28 4.224±2.15 1.475±0.48 2.712±0.33 1.090±0.26 1.915±0.17 1.538±0.64 3.110±0.26 1.256±0.42 4.070±2.15 1.076±0.71 1.107±0.30
ENSMUST00000111560 N/A 1.080±0.39 N/A N/A N/A 0.798±0.12 N/A 0.478±0.00 0.399±0.00 0.736±0.00 0.388±0.00 N/A 0.436±0.19 0.983±0.43
ENSMUST00000139193 N/A N/A N/A N/A N/A N/A 1.280±0.00 N/A N/A N/A N/A N/A N/A 1.999±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000480 CIL_000480_0002 CGP 9:121642716-121705490
CIL_00047Z CIL_00047Z_0002 CGP 9:121680047-121712921

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005783 IEA endoplasmic reticulum
GO:0006810 IEA transport
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063387 sec22c SEC22 vesicle trafficking protein homolog C (S. cerevisiae) protein_coding Danio_rerio
ENSG00000093183 SEC22C SEC22 vesicle trafficking protein homolog C (S. cerevisiae) protein_coding Homo_sapiens

Loading