C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SEC22 vesicle trafficking protein homolog C (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000451653 SEC22C-003 ENSG00000093183 9606 - 3:42547969-42563632 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000451653
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000451653 3.232±0.00 6.138±0.00 4.843±0.27 5.328±0.00 2.397±0.00 3.040±0.82 4.582±0.00 1.230±0.00 1.162±0.37 4.743±0.95 1.516±0.17 3.854±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000480 CIL_000480_0001 CGP 3:42489299-42601080
CIL_00047Z CIL_00047Z_0001 CGP 3:42547969-42601080

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006810 IEA transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078547 Sec22c-201 protein_coding Mus_musculus 0 671
ENSMUST00000111560 Sec22c-001 protein_coding Mus_musculus 0 671
ENSMUST00000139193 Sec22c-003 nonsense_mediated_decay Mus_musculus 0 536
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.0000002 64
ENSMUST00000100420 Loxl2-002 protein_coding Mus_musculus 0.0000002 64
ENSMUST00000022660 Loxl2-001 protein_coding Mus_musculus 0.0000002 64

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