C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cell division cycle 23
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000094880 CDC23 9606 - 5:138187648-138213343 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000394884 CDC23-002 138205871-138213343 protein_coding
  ENST00000394886 CDC23-001 138187648-138213343 protein_coding
  ENST00000464806 CDC23-006 138188987-138190107 retained_intron
  ENST00000471692 CDC23-003 138189670-138198623 retained_intron
  ENST00000475021 CDC23-007 138189114-138190070 retained_intron
  ENST00000482948 CDC23-004 138200927-138213215 retained_intron
  ENST00000483961 CDC23-011 138201107-138213323 nonsense_mediated_decay
  ENST00000505120 CDC23-009 138206471-138213323 protein_coding
  ENST00000511383 CDC23-008 138201165-138213304 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000394886
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000394886 6.584±0.00 7.056±0.00 2.065±0.00 4.706±0.08 4.912±1.69 4.437±0.26 3.234±1.42 5.035±2.79 4.332±0.59 2.759±0.46 1.892±0.42 7.627±1.94 14.433±2.03 15.183±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005P9 CIL_0005P9_0001 CGP 5:138139766-138187715
CIL_0005PA CIL_0005PA_0001 CGP 5:138178719-138213343
CIL_0005D9 CIL_0005D9_0001 CGP 5:138187648-138274671

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0004842 TAS ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005622 IDA intracellular
GO:0005654 TAS nucleoplasm
GO:0005680 IDA:IEA anaphase-promoting complex
GO:0005829 TAS cytosol
GO:0006511 TAS ubiquitin-dependent protein catabolic process
GO:0007067 IDA mitotic nuclear division
GO:0007080 IDA mitotic metaphase plate congression
GO:0007091 TAS metaphase/anaphase transition of mitotic cell cycle
GO:0007094 TAS mitotic spindle assembly checkpoint
GO:0007096 TAS regulation of exit from mitosis
GO:0030071 IDA:IEA regulation of mitotic metaphase/anaphase transition
GO:0031145 TAS anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0051436 TAS negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051437 TAS positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051439 TAS regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0070979 IDA protein K11-linked ubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044484 cdc23 CDC23 (cell division cycle 23, yeast, homolog) protein_coding Danio_rerio
ENSMUSG00000024370 Cdc23 CDC23 cell division cycle 23 protein_coding Mus_musculus

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