C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cell division cycle 23
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394886 CDC23-001 ENSG00000094880 9606 - 5:138187648-138213343 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000394886
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000394886 6.584±0.00 7.056±0.00 2.065±0.00 4.706±0.08 4.912±1.69 4.437±0.26 3.234±1.42 5.035±2.79 4.332±0.59 2.759±0.46 1.892±0.42 7.627±1.94 14.433±2.03 15.183±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005P9 CIL_0005P9_0001 CGP 5:138139766-138187715
CIL_0005PA CIL_0005PA_0001 CGP 5:138178719-138213343
CIL_0005D9 CIL_0005D9_0001 CGP 5:138187648-138274671

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0004842 TAS ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005622 IDA intracellular
GO:0005654 TAS nucleoplasm
GO:0005680 IDA:IEA anaphase-promoting complex
GO:0005829 TAS cytosol
GO:0006511 TAS ubiquitin-dependent protein catabolic process
GO:0007067 IDA mitotic nuclear division
GO:0007080 IDA mitotic metaphase plate congression
GO:0007091 TAS metaphase/anaphase transition of mitotic cell cycle
GO:0007094 TAS mitotic spindle assembly checkpoint
GO:0007096 TAS regulation of exit from mitosis
GO:0030071 IDA:IEA regulation of mitotic metaphase/anaphase transition
GO:0031145 TAS anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0051436 TAS negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051437 TAS positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051439 TAS regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0070979 IDA protein K11-linked ubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000133181 Cdc23-002 protein_coding Mus_musculus 0 2257
ENSMUST00000025228 Cdc23-001 protein_coding Mus_musculus 0 2115
ENSMUST00000133162 Cdc23-004 retained_intron Mus_musculus 0 1650
ENSMUST00000136943 Cdc23-006 retained_intron Mus_musculus 0 604
ENSMUST00000138400 Cdc23-009 retained_intron Mus_musculus 0 374
ENSMUST00000155307 Cdc23-007 retained_intron Mus_musculus 0 368
ENSMUST00000136949 Cdc23-008 retained_intron Mus_musculus 0 211

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