C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005D9_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000094880-ENSG00000146013 CGP 9606 5:138187648-138274671
GeneTranscriptPositionBiotype
ENSG00000112984 (KIF20A)
kinesin family member 20A 		ENST00000394894 (KIF20A-001) 138178998-138187715 protein_coding
ENST00000502338 (KIF20A-007) 138184828-138187243 nonsense_mediated_decay
ENST00000503417 (KIF20A-006) 138179169-138181896 retained_intron
ENST00000504621 (KIF20A-005) 138179221-138182747 protein_coding
ENST00000508792 (KIF20A-002) 138179160-138187665 protein_coding
ENST00000511638 (KIF20A-003) 138179168-138181704 retained_intron
ENST00000513276 (KIF20A-004) 138178719-138182425 protein_coding
ENSG00000146013 (GFRA3)
GDNF family receptor alpha 3 		ENST00000274721 (GFRA3-001) 138252379-138274671 protein_coding
ENST00000378362 (GFRA3-002) 138252382-138274565 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0005D9_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024370-ENSMUSG00000024366 CGP 10090 18:34630951-34720387
GeneTranscriptPositionBiotype
ENSMUSG00000003779 (Kif20a)
kinesin family member 20A 		ENSMUST00000166044 (Kif20a-201) 34625033-34633265 protein_coding
ENSMUST00000167161 (Kif20a-202) 34624624-34633265 protein_coding
ENSMUSG00000024366 (Gfra3)
glial cell line derived neurotrophic factor family receptor alpha 3 		ENSMUST00000025224 (Gfra3-201) 34689903-34720387 protein_coding
ENSMUSG00000024370 (Cdc23)
CDC23 cell division cycle 23 		ENSMUST00000025228 (Cdc23-001) 34630951-34651735 protein_coding
ENSMUST00000133162 (Cdc23-004) 34636054-34651718 retained_intron
ENSMUST00000133181 (Cdc23-002) 34631683-34651735 protein_coding
ENSMUST00000135208 (Cdc23-003) 34647704-34651722 retained_intron
ENSMUST00000136943 (Cdc23-006) 34641383-34645319 retained_intron
ENSMUST00000136949 (Cdc23-008) 34636057-34637092 retained_intron
ENSMUST00000138400 (Cdc23-009) 34633678-34634630 retained_intron
ENSMUST00000151409 (Cdc23-005) 34646852-34651718 retained_intron
ENSMUST00000155307 (Cdc23-007) 34637059-34637871 retained_intron
ENSMUSG00000064857 (n-R5s25)
nuclear encoded rRNA 5S 25 		ENSMUST00000082923 (n-R5s25-201) 34647400-34647518 rRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005D9_0001ENSG00000112984ENST00000394894ENST00000502338ENST00000503417ENST00000504621ENST00000508792ENST00000511638ENST00000513276ENSG00000146013ENST00000274721ENST00000378362CIL_0005D9_0002ENSMUSG00000003779ENSMUST00000166044ENSMUST00000167161ENSMUSG00000024366ENSMUST00000025224ENSMUSG00000024370ENSMUST00000025228ENSMUST00000133162ENSMUST00000133181ENSMUST00000135208ENSMUST00000136943ENSMUST00000136949ENSMUST00000138400ENSMUST00000151409ENSMUST00000155307ENSMUSG00000064857ENSMUST00000082923
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005D9_0001ENSG00000112984ENST00000394894ENST00000508792ENSG00000146013ENST00000274721ENST00000378362CIL_0005D9_0002ENSMUSG00000003779ENSMUST00000166044ENSMUST00000167161ENSMUSG00000024366ENSMUST00000025224ENSMUSG00000024370ENSMUST00000025228ENSMUST00000133181ENSMUST00000138400ENSMUSG00000064857ENSMUST00000082923
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000112984 ENST00000394894 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.194±1.89 N/A N/A
ENST00000502338 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504621 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508792 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.520±0.00 N/A
ENST00000511638 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513276 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000146013 ENST00000274721 0.505±0.00 0.228±0.00 N/A N/A N/A 2.551±0.00 0.350±0.17 N/A 0.079±0.00 0.337±0.10 N/A 1.118±0.51 N/A 5.005±0.00
ENST00000378362 N/A 0.038±0.00 N/A N/A 0.190±0.12 N/A 0.478±0.00 0.222±0.00 N/A N/A 0.348±0.00 0.484±0.00 0.034±0.00 0.949±0.30
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000003779 ENSMUST00000166044 N/A N/A N/A N/A N/A N/A N/A N/A 11.634±0.00 N/A N/A N/A 7.162±0.89 N/A
ENSMUST00000167161 3.307±0.00 N/A N/A N/A N/A 2.563±0.02 N/A N/A 12.010±8.94 N/A N/A 2.790±0.25 15.681±2.97 9.841±4.80
ENSMUSG00000024366 ENSMUST00000025224 1.240±0.20 2.978±1.10 4.828±0.74 0.274±0.18 1.567±0.43 3.175±0.45 2.311±0.48 0.499±0.06 0.026±0.02 0.790±0.07 0.061±0.03 0.726±0.34 0.870±0.77 0.197±0.09
ENSMUSG00000024370 ENSMUST00000025228 N/A N/A 4.014±0.00 3.645±0.00 N/A 1.866±0.00 N/A 2.559±0.46 0.859±0.14 3.257±0.00 1.691±0.12 4.867±2.23 6.061±0.00 N/A
ENSMUST00000133162 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133181 8.832±2.76 5.529±0.51 5.991±1.05 17.162±10.55 6.114±0.76 3.821±0.70 4.892±0.76 3.408±1.09 10.060±9.68 7.393±0.50 2.482±0.97 9.015±3.19 12.243±4.61 6.275±0.50
ENSMUST00000135208 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136943 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136949 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138400 19.868±2.13 13.059±1.74 N/A N/A 14.963±4.20 7.387±1.06 8.325±0.74 8.707±1.83 2.840±1.29 10.836±2.15 4.910±0.91 22.207±7.60 18.419±0.00 N/A
ENSMUST00000151409 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155307 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000064857 ENSMUST00000082923 N/A N/A 31.646±0.00 8.708±0.00 N/A N/A N/A N/A 10.166±2.54 N/A N/A N/A N/A N/A

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