C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nucleoporin 188kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000095319 NUP188 9606 + 9:128947699-129007096 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000372577 NUP188-001 128947699-129007096 protein_coding
  ENST00000464729 NUP188-004 128948959-128952895 retained_intron
  ENST00000465344 NUP188-008 128983514-128985262 processed_transcript
  ENST00000467044 NUP188-011 128993095-128994890 processed_transcript
  ENST00000477069 NUP188-002 128984971-129003993 retained_intron
  ENST00000485158 NUP188-006 128994396-128995200 retained_intron
  ENST00000487952 NUP188-012 128999601-129001891 retained_intron
  ENST00000491502 NUP188-005 128986589-128993230 processed_transcript
  ENST00000491990 NUP188-013 128947707-128958054 processed_transcript
  ENST00000495726 NUP188-003 128995136-128998596 retained_intron
  ENST00000550219 NUP188-010 128948017-128957011 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372577ENST00000477069
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372577 5.210±0.00 6.319±0.00 4.762±2.79 3.725±1.28 4.296±1.42 2.862±2.11 4.679±3.74 2.890±0.71 7.615±3.78 3.999±3.37 12.691±7.08 8.881±1.20 50.610±7.97
ENST00000477069 N/A N/A N/A N/A N/A N/A 1.513±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002LW CIL_0002LW_0002 CGP 9:128945530-129007096
CIL_0006OJ CIL_0006OJ_0001 CGP 9:128947699-129028303

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0005488 IEA binding
GO:0005635 TAS nuclear envelope
GO:0005643 IEA nuclear pore
GO:0005975 TAS carbohydrate metabolic process
GO:0007077 TAS mitotic nuclear envelope disassembly
GO:0008645 TAS hexose transport
GO:0010827 TAS regulation of glucose transport
GO:0015031 IEA protein transport
GO:0015758 TAS glucose transport
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0044281 TAS small molecule metabolic process
GO:0051028 IEA mRNA transport
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030022 nup188 nucleoporin 188 protein_coding Danio_rerio
ENSMUSG00000052533 Nup188 nucleoporin 188 protein_coding Mus_musculus

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