C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002LW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000076991-ENSDARG00000030022 CGP 7955 21:4792179-4864663
GeneTranscriptPositionBiotype
ENSDARG00000019208 (camsap1a)
calmodulin regulated spectrin-associated protein 1a 		ENSDART00000102643 (camsap1a-201) 4850917-5019259 protein_coding
ENSDART00000129355 (camsap1a-002) 4982481-5022143 protein_coding
ENSDART00000137404 (camsap1a-001) 4970694-5013966 protein_coding
ENSDARG00000030022 (nup188)
nucleoporin 188 		ENSDART00000043431 (nup188-201) 4798150-4864663 protein_coding
ENSDARG00000076991 (dolk)
dolichol kinase 		ENSDART00000112460 (dolk-001) 4792179-4797922 protein_coding
CIL_0002LW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000175283-ENSG00000095319 CGP 9606 9:128945530-129007096
GeneTranscriptPositionBiotype
ENSG00000095319 (NUP188)
nucleoporin 188kDa 		ENST00000372577 (NUP188-001) 128947699-129007096 protein_coding
ENST00000464729 (NUP188-004) 128948959-128952895 retained_intron
ENST00000465344 (NUP188-008) 128983514-128985262 processed_transcript
ENST00000467044 (NUP188-011) 128993095-128994890 processed_transcript
ENST00000477069 (NUP188-002) 128984971-129003993 retained_intron
ENST00000485158 (NUP188-006) 128994396-128995200 retained_intron
ENST00000487952 (NUP188-012) 128999601-129001891 retained_intron
ENST00000491502 (NUP188-005) 128986589-128993230 processed_transcript
ENST00000491990 (NUP188-013) 128947707-128958054 processed_transcript
ENST00000495726 (NUP188-003) 128995136-128998596 retained_intron
ENST00000550219 (NUP188-010) 128948017-128957011 processed_transcript
ENSG00000148341 (SH3GLB2)
SH3-domain GRB2-like endophilin B2 		ENST00000372554 (SH3GLB2-008) 129008039-129028279 protein_coding
ENST00000372559 (SH3GLB2-002) 129008034-129028214 protein_coding
ENST00000372564 (SH3GLB2-001) 129007036-129028300 protein_coding
ENST00000416230 (SH3GLB2-006) 129014421-129028198 nonsense_mediated_decay
ENST00000416629 (SH3GLB2-012) 129008450-129028210 protein_coding
ENST00000417224 (SH3GLB2-011) 129008450-129028185 protein_coding
ENST00000425236 (SH3GLB2-007) 129012230-129021211 nonsense_mediated_decay
ENST00000455407 (SH3GLB2-005) 129009227-129028303 nonsense_mediated_decay
ENST00000461811 (SH3GLB2-004) 129008137-129013950 retained_intron
ENST00000477165 (SH3GLB2-009) 129011724-129014458 retained_intron
ENST00000479237 (SH3GLB2-003) 129007792-129012016 retained_intron
ENST00000483980 (SH3GLB2-010) 129009736-129028295 retained_intron
ENSG00000175283 (DOLK)
dolichol kinase 		ENST00000372586 (DOLK-001) 128945530-128947619 protein_coding
ENSG00000267834 (RP11-167N5.5)
 ENST00000594418 (RP11-167N5.5-001) 129004502-129004998 lincRNA
CIL_0002LW_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000075419-ENSMUSG00000052533 CGP 10090 2:30284231-30344266
GeneTranscriptPositionBiotype
ENSMUSG00000052533 (Nup188)
nucleoporin 188 		ENSMUST00000064447 (Nup188-001) 30286397-30344266 protein_coding
ENSMUST00000113634 (Nup188-002) 30286427-30303809 protein_coding
ENSMUST00000133421 (Nup188-006) 30342940-30344145 retained_intron
ENSMUST00000133603 (Nup188-005) 30286429-30326686 retained_intron
ENSMUST00000138666 (Nup188-003) 30286424-30303810 protein_coding
ENSMUST00000148969 (Nup188-007) 30286397-30307732 nonsense_mediated_decay
ENSMUST00000156023 (Nup188-004) 30286417-30304092 processed_transcript
ENSMUSG00000075419 (Dolk)
dolichol kinase 		ENSMUST00000100219 (Dolk-001) 30284231-30286334 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002LW_0001ENSDARG00000019208ENSDART00000102643ENSDART00000129355ENSDART00000137404ENSDARG00000030022ENSDART00000043431ENSDARG00000076991ENSDART00000112460CIL_0002LW_0002ENSG00000095319ENST00000372577ENST00000464729ENST00000465344ENST00000467044ENST00000477069ENST00000485158ENST00000487952ENST00000491502ENST00000491990ENST00000495726ENST00000550219ENSG00000148341ENST00000372554ENST00000372559ENST00000372564ENST00000416230ENST00000416629ENST00000417224ENST00000425236ENST00000455407ENST00000461811ENST00000477165ENST00000479237ENST00000483980ENSG00000175283ENST00000372586ENSG00000267834ENST00000594418CIL_0002LW_0003ENSMUSG00000052533ENSMUST00000064447ENSMUST00000113634ENSMUST00000133421ENSMUST00000133603ENSMUST00000138666ENSMUST00000148969ENSMUST00000156023ENSMUSG00000075419ENSMUST00000100219
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002LW_0001ENSDARG00000019208ENSDART00000102643ENSDART00000129355ENSDART00000137404ENSDARG00000030022ENSDART00000043431ENSDARG00000076991ENSDART00000112460CIL_0002LW_0002ENSG00000095319ENST00000372577ENST00000477069ENSG00000148341ENST00000372554ENST00000372559ENST00000372564ENST00000417224ENST00000479237ENST00000483980ENSG00000175283ENST00000372586ENSG00000267834ENST00000594418CIL_0002LW_0003ENSMUSG00000052533ENSMUST00000064447ENSMUST00000148969ENSMUSG00000075419ENSMUST00000100219
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000019208 ENSDART00000102643 N/A N/A N/A N/A N/A N/A N/A 0.333±0.00 0.035±0.00 N/A N/A N/A N/A N/A
ENSDART00000129355 N/A N/A N/A N/A N/A N/A N/A 0.468±0.00 0.075±0.00 N/A N/A N/A N/A N/A
ENSDART00000137404 N/A N/A N/A 1.965±0.00 N/A N/A N/A 0.742±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000030022 ENSDART00000043431 N/A N/A N/A 3.855±2.75 N/A N/A 5.130±0.25 4.103±4.34 2.724±0.00 N/A 3.214±0.00 N/A N/A N/A
ENSDARG00000076991 ENSDART00000112460 N/A N/A N/A 1.632±1.73 N/A N/A 0.513±0.08 1.035±0.82 0.579±0.00 N/A 0.319±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000095319 ENST00000372577 5.210±0.00 6.319±0.00 N/A 4.762±2.79 3.725±1.28 4.296±1.42 2.862±2.11 4.679±3.74 2.890±0.71 7.615±3.78 3.999±3.37 12.691±7.08 8.881±1.20 50.610±7.97
ENST00000464729 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465344 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467044 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477069 N/A N/A N/A N/A N/A N/A N/A 1.513±0.00 N/A N/A N/A N/A N/A N/A
ENST00000485158 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487952 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491502 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491990 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550219 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000148341 ENST00000372554 N/A N/A N/A 33.251±23.06 18.991±0.00 N/A 10.256±0.00 N/A N/A 28.589±0.00 6.861±5.97 N/A 41.730±0.00 N/A
ENST00000372559 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.354±0.00 52.528±0.00 31.634±6.21 N/A
ENST00000372564 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.255±0.00 N/A N/A N/A N/A
ENST00000416230 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000416629 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000417224 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 34.812±0.00 N/A
ENST00000425236 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455407 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461811 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477165 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479237 N/A N/A N/A N/A N/A N/A N/A 15.065±0.00 N/A N/A N/A 34.139±0.00 N/A N/A
ENST00000483980 N/A N/A 2.977±0.00 N/A N/A 8.709±0.00 N/A N/A 5.556±0.00 N/A 2.050±0.00 N/A N/A N/A
ENSG00000175283 ENST00000372586 6.841±0.00 16.054±0.00 2.698±0.00 5.542±1.24 6.785±4.17 2.301±0.16 2.038±1.08 5.758±2.80 4.901±1.68 3.246±0.55 2.470±0.30 9.937±4.48 12.162±2.16 13.657±2.22
ENSG00000267834 ENST00000594418 0.045±0.00 1.260±0.00 0.279±0.00 0.380±0.15 0.980±0.47 2.395±0.00 0.151±0.08 0.551±0.00 0.855±0.64 0.148±0.08 0.083±0.04 0.499±0.50 0.176±0.07 0.241±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000052533 ENSMUST00000064447 16.690±1.49 15.354±1.49 8.762±0.77 11.244±6.01 14.435±2.42 11.055±0.97 6.625±1.86 8.279±2.24 11.210±5.13 11.552±1.00 2.412±0.17 19.910±5.72 11.567±3.77 44.750±15.45
ENSMUST00000113634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133421 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133603 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138666 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148969 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 39.016±0.00
ENSMUST00000156023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000075419 ENSMUST00000100219 36.757±13.00 25.234±2.37 7.318±0.82 4.819±0.77 26.026±1.31 9.619±1.35 8.456±3.24 13.778±1.12 7.334±2.43 11.425±1.01 10.323±0.41 16.161±4.95 11.380±3.28 2.716±1.12

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