C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin 188kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372577 NUP188-001 ENSG00000095319 9606 + 9:128947699-129007096 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372577
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372577 5.210±0.00 6.319±0.00 4.762±2.79 3.725±1.28 4.296±1.42 2.862±2.11 4.679±3.74 2.890±0.71 7.615±3.78 3.999±3.37 12.691±7.08 8.881±1.20 50.610±7.97

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002LW CIL_0002LW_0002 CGP 9:128945530-129007096
CIL_0006OJ CIL_0006OJ_0001 CGP 9:128947699-129028303

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0005488 IEA binding
GO:0005635 TAS nuclear envelope
GO:0005643 IEA nuclear pore
GO:0005975 TAS carbohydrate metabolic process
GO:0007077 TAS mitotic nuclear envelope disassembly
GO:0008645 TAS hexose transport
GO:0010827 TAS regulation of glucose transport
GO:0015031 IEA protein transport
GO:0015758 TAS glucose transport
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0044281 TAS small molecule metabolic process
GO:0051028 IEA mRNA transport
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000064447 Nup188-001 protein_coding Mus_musculus 0 5358
ENSMUST00000133603 Nup188-005 retained_intron Mus_musculus 0 2826
ENSMUST00000148969 Nup188-007 nonsense_mediated_decay Mus_musculus 0 573
ENSMUST00000113634 Nup188-002 protein_coding Mus_musculus 0 518
ENSMUST00000138666 Nup188-003 protein_coding Mus_musculus 0 492
ENSMUST00000143119 Gm28038-001 protein_coding Mus_musculus 0 372
ENSMUST00000156023 Nup188-004 processed_transcript Mus_musculus 0 353
ENSMUST00000133421 Nup188-006 retained_intron Mus_musculus 0 257

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