C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Region Summary |
| CIL_0006OJ_0001 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSG00000095319-ENSG00000148341 | CGP | 9606 | 9:128947699-129028303  |
|
| Gene | Transcript | Position | Biotype | |
ENSG00000095319  (NUP188)nucleoporin 188kDa |
ENST00000372577 (NUP188-001)
|
128947699-129007096 | protein_coding | |
|
ENST00000464729 (NUP188-004)
|
128948959-128952895 | retained_intron | ||
|
ENST00000465344 (NUP188-008)
|
128983514-128985262 | processed_transcript | ||
|
ENST00000467044 (NUP188-011)
|
128993095-128994890 | processed_transcript | ||
|
ENST00000477069 (NUP188-002)
|
128984971-129003993 | retained_intron | ||
|
ENST00000485158 (NUP188-006)
|
128994396-128995200 | retained_intron | ||
|
ENST00000487952 (NUP188-012)
|
128999601-129001891 | retained_intron | ||
|
ENST00000491502 (NUP188-005)
|
128986589-128993230 | processed_transcript | ||
|
ENST00000491990 (NUP188-013)
|
128947707-128958054 | processed_transcript | ||
|
ENST00000495726 (NUP188-003)
|
128995136-128998596 | retained_intron | ||
|
ENST00000550219 (NUP188-010)
|
128948017-128957011 | processed_transcript | ||
|
ENSG00000148341 (SH3GLB2) SH3-domain GRB2-like endophilin B2 |
ENST00000372554 (SH3GLB2-008)
|
129008039-129028279 | protein_coding | |
|
ENST00000372559 (SH3GLB2-002)
|
129008034-129028214 | protein_coding | ||
|
ENST00000372564 (SH3GLB2-001)
|
129007036-129028300 | protein_coding | ||
|
ENST00000416230 (SH3GLB2-006)
|
129014421-129028198 | nonsense_mediated_decay | ||
|
ENST00000416629 (SH3GLB2-012)
|
129008450-129028210 | protein_coding | ||
|
ENST00000417224 (SH3GLB2-011)
|
129008450-129028185 | protein_coding | ||
|
ENST00000425236 (SH3GLB2-007)
|
129012230-129021211 | nonsense_mediated_decay | ||
|
ENST00000455407 (SH3GLB2-005)
|
129009227-129028303 | nonsense_mediated_decay | ||
|
ENST00000461811 (SH3GLB2-004)
|
129008137-129013950 | retained_intron | ||
|
ENST00000477165 (SH3GLB2-009)
|
129011724-129014458 | retained_intron | ||
|
ENST00000479237 (SH3GLB2-003)
|
129007792-129012016 | retained_intron | ||
|
ENST00000483980 (SH3GLB2-010)
|
129009736-129028295 | retained_intron | ||
|
ENSG00000267834 (RP11-167N5.5) |
ENST00000594418 (RP11-167N5.5-001)
|
129004502-129004998 | lincRNA | |
| CIL_0006OJ_0002 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSMUSG00000052533-ENSMUSG00000026860 | CGP | 10090 | 2:30286397-30359337 |
|
| Gene | Transcript | Position | Biotype | |
|
ENSMUSG00000026860 (Sh3glb2) SH3-domain GRB2-like endophilin B2 |
ENSMUST00000028214 (Sh3glb2-001)
|
30344809-30359316 | protein_coding | |
|
ENSMUST00000100215 (Sh3glb2-002)
|
30344809-30359240 | protein_coding | ||
|
ENSMUST00000113620 (Sh3glb2-003)
|
30344811-30359265 | protein_coding | ||
|
ENSMUST00000113621 (Sh3glb2-004)
|
30344811-30359332 | protein_coding | ||
|
ENSMUST00000128387 (Sh3glb2-013)
|
30345820-30359337 | processed_transcript | ||
|
ENSMUST00000139963 (Sh3glb2-006)
|
30349740-30359260 | retained_intron | ||
|
ENSMUST00000140801 (Sh3glb2-008)
|
30348068-30355365 | retained_intron | ||
|
ENSMUST00000140899 (Sh3glb2-009)
|
30348090-30354880 | retained_intron | ||
|
ENSMUST00000142689 (Sh3glb2-012)
|
30345141-30346101 | processed_transcript | ||
|
ENSMUST00000142720 (Sh3glb2-011)
|
30346108-30347587 | retained_intron | ||
|
ENSMUST00000146400 (Sh3glb2-010)
|
30345886-30347656 | retained_intron | ||
|
ENSMUST00000151145 (Sh3glb2-007)
|
30349483-30359245 | processed_transcript | ||
|
ENSMUST00000151354 (Sh3glb2-005)
|
30345135-30359305 | retained_intron | ||
|
ENSMUST00000163668 (Sh3glb2-201)
|
30344811-30359289 | protein_coding | ||
|
ENSMUSG00000052533 (Nup188) nucleoporin 188 |
ENSMUST00000064447 (Nup188-001)
|
30286397-30344266 | protein_coding | |
|
ENSMUST00000113634 (Nup188-002)
|
30286427-30303809 | protein_coding | ||
|
ENSMUST00000133421 (Nup188-006)
|
30342940-30344145 | retained_intron | ||
|
ENSMUST00000133603 (Nup188-005)
|
30286429-30326686 | retained_intron | ||
|
ENSMUST00000138666 (Nup188-003)
|
30286424-30303810 | protein_coding | ||
|
ENSMUST00000148969 (Nup188-007)
|
30286397-30307732 | nonsense_mediated_decay | ||
|
ENSMUST00000156023 (Nup188-004)
|
30286417-30304092 | processed_transcript | ||
|
ENSMUSG00000078010 (Gm23489) predicted gene, 23489 |
ENSMUST00000104817 (Gm23489-201)
|
30353443-30353527 | miRNA | |
Expression Patterns
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