C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nucleoporin 188
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000052533 Nup188 10090 + 2:30286397-30344266 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000064447 Nup188-001 30286397-30344266 protein_coding
  ENSMUST00000113634 Nup188-002 30286427-30303809 protein_coding
  ENSMUST00000133421 Nup188-006 30342940-30344145 retained_intron
  ENSMUST00000133603 Nup188-005 30286429-30326686 retained_intron
  ENSMUST00000138666 Nup188-003 30286424-30303810 protein_coding
  ENSMUST00000148969 Nup188-007 30286397-30307732 nonsense_mediated_decay
  ENSMUST00000156023 Nup188-004 30286417-30304092 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000064447ENSMUST00000148969
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000064447 16.690±1.49 15.354±1.49 8.762±0.77 11.244±6.01 14.435±2.42 11.055±0.97 6.625±1.86 8.279±2.24 11.210±5.13 11.552±1.00 2.412±0.17 19.910±5.72 11.567±3.77 44.750±15.45
ENSMUST00000148969 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 39.016±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002LW CIL_0002LW_0003 CGP 2:30284231-30344266
CIL_0006OJ CIL_0006OJ_0002 CGP 2:30286397-30359337

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005643 IEA nuclear pore
GO:0015031 IEA protein transport
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030022 nup188 nucleoporin 188 protein_coding Danio_rerio
ENSG00000095319 NUP188 nucleoporin 188kDa protein_coding Homo_sapiens
ENSG00000251184 RP11-101E3.5 Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000417556} protein_coding Homo_sapiens

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