C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: EF-hand domain (C-terminal) containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000096093 EFHC1 9606 + 6:52420308-52495785 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000371068 EFHC1-001 52420308-52495785 protein_coding
  ENST00000480623 EFHC1-002 52420308-52492500 nonsense_mediated_decay
  ENST00000481466 EFHC1-004 52488557-52492546 processed_transcript
  ENST00000491749 EFHC1-003 52420362-52438556 processed_transcript
  ENST00000538167 EFHC1-201 52423809-52495783 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000371068ENST00000480623ENST00000481466ENST00000538167
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000371068 N/A 0.139±0.00 N/A N/A N/A 0.099±0.00 N/A 0.807±0.00 0.097±0.00 1.056±0.00 N/A 1.583±1.22 0.161±0.07 N/A
ENST00000480623 0.310±0.00 0.516±0.00 0.716±0.00 0.598±0.00 0.471±0.14 0.493±0.04 0.421±0.00 0.674±0.51 0.299±0.05 1.171±0.48 0.237±0.00 2.087±0.26 0.516±0.09 6.885±0.87
ENST00000481466 1.040±0.00 N/A N/A N/A 1.590±0.00 N/A N/A N/A 0.432±0.00 N/A N/A N/A N/A 9.085±0.00
ENST00000538167 N/A 0.393±0.00 N/A N/A N/A 0.092±0.00 0.123±0.00 N/A 0.097±0.00 1.818±0.00 0.051±0.00 N/A 0.124±0.00 1.580±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081C CIL_00081C_0001 VISTA 6:52088930-52691414
CIL_0005N1 CIL_0005N1_0001 CGP 6:52361421-52495785
CIL_0005N7 CIL_0005N7_0001 CGP 6:52420308-52576915

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005929 IEA cilium
GO:0005930 ISS axoneme
GO:0008022 ISS protein C-terminus binding
GO:0043025 ISS neuronal cell body

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009743 efhc1 EF-hand domain (C-terminal) containing 1 protein_coding Danio_rerio
ENSMUSG00000041809 Efhc1 EF-hand domain (C-terminal) containing 1 protein_coding Mus_musculus

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