C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: EF-hand domain (C-terminal) containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000480623 EFHC1-002 ENSG00000096093 9606 + 6:52420308-52492500 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000480623
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000480623 0.310±0.00 0.516±0.00 0.716±0.00 0.598±0.00 0.471±0.14 0.493±0.04 0.421±0.00 0.674±0.51 0.299±0.05 1.171±0.48 0.237±0.00 2.087±0.26 0.516±0.09 6.885±0.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081C CIL_00081C_0001 VISTA 6:52088930-52691414
CIL_0005N1 CIL_0005N1_0001 CGP 6:52361421-52495785
CIL_0005N7 CIL_0005N7_0001 CGP 6:52420308-52576915

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005930 ISS axoneme
GO:0008022 ISS protein C-terminus binding
GO:0043025 ISS neuronal cell body

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038447 Efhc1-001 protein_coding Mus_musculus 0 1081

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