C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: syntaxin 1B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000099365 STX1B 9606 - 16:30989256-31010628 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000215095 STX1B-001 30989256-31010628 protein_coding
  ENST00000561836 STX1B-004 31000896-31010502 retained_intron
  ENST00000565419 STX1B-003 30992708-31010396 protein_coding
  ENST00000566211 STX1B-005 30996199-30997044 retained_intron
  ENST00000569638 STX1B-002 30989258-31000955 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000215095ENST00000561836ENST00000565419ENST00000566211ENST00000569638
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000215095 N/A N/A N/A 62.400±0.00 N/A 0.132±0.00 N/A N/A N/A N/A N/A 0.426±0.00 N/A 1.058±0.24
ENST00000561836 N/A N/A N/A 6.588±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.040±0.00 N/A
ENST00000565419 N/A N/A N/A 3.178±0.00 N/A 0.031±0.00 N/A N/A N/A N/A N/A 0.478±0.43 0.106±0.00 4.870±0.00
ENST00000566211 N/A N/A 0.184±0.00 N/A N/A N/A N/A 0.721±0.00 N/A N/A N/A N/A 0.135±0.00 N/A
ENST00000569638 0.554±0.00 1.801±0.00 0.094±0.00 5.231±0.00 0.481±0.33 0.456±0.00 0.182±0.00 0.296±0.18 0.628±0.00 0.176±0.00 0.132±0.00 0.461±0.24 0.063±0.02 1.133±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001X8 CIL_0001X8_0001 CGP 16:30985207-31010628
CIL_0001XW CIL_0001XW_0001 CGP 16:30989256-31042975

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000149 IEA SNARE binding
GO:0001956 ISS positive regulation of neurotransmitter secretion
GO:0005484 IEA SNAP receptor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 ISS plasma membrane
GO:0006886 IEA intracellular protein transport
GO:0010468 ISS regulation of gene expression
GO:0010807 ISS regulation of synaptic vesicle priming
GO:0015031 IEA protein transport
GO:0016020 ISS:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016081 ISS synaptic vesicle docking involved in exocytosis
GO:0016192 IEA vesicle-mediated transport
GO:0017157 IEA regulation of exocytosis
GO:0019901 ISS protein kinase binding
GO:0019904 IEA protein domain specific binding
GO:2000463 ISS positive regulation of excitatory postsynaptic membrane potential

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000503 stx1b syntaxin 1B protein_coding Danio_rerio
ENSMUSG00000030806 Stx1b syntaxin 1B protein_coding Mus_musculus

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