C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntaxin 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000565419 STX1B-003 ENSG00000099365 9606 - 16:30992708-31010396 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonOvaryPlacentaTestisENST00000565419
Transcript ID Brain Colon Ovary Placenta Testis
ENST00000565419 3.178±0.00 0.031±0.00 0.478±0.43 0.106±0.00 4.870±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001X8 CIL_0001X8_0001 CGP 16:30985207-31010628
CIL_0001XW CIL_0001XW_0001 CGP 16:30989256-31042975

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000149 IEA SNARE binding
GO:0001956 ISS positive regulation of neurotransmitter secretion
GO:0005484 IEA SNAP receptor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 ISS plasma membrane
GO:0006886 IEA intracellular protein transport
GO:0010468 ISS regulation of gene expression
GO:0010807 ISS regulation of synaptic vesicle priming
GO:0016020 ISS:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016081 ISS synaptic vesicle docking involved in exocytosis
GO:0016192 IEA vesicle-mediated transport
GO:0019901 ISS protein kinase binding
GO:2000463 ISS positive regulation of excitatory postsynaptic membrane potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106267 Stx1b-001 protein_coding Mus_musculus 0 1086
ENSDART00000081951 stx1b-001 protein_coding Danio_rerio 0 708
ENSMUST00000005509 Stx1a-001 protein_coding Mus_musculus 0 590
ENSMUST00000156135 Stx1b-002 retained_intron Mus_musculus 0 505
ENSMUST00000150838 Stx1a-003 nonsense_mediated_decay Mus_musculus 0 494
ENSMUST00000133812 Stx1a-005 processed_transcript Mus_musculus 0 414
ENSMUST00000156626 Stx1a-002 retained_intron Mus_musculus 0 372
ENSMUST00000144198 Stx1a-004 processed_transcript Mus_musculus 0 357

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