C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001X8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000099377-ENSG00000099365 CGP 9606 16:30985207-31010628
GeneTranscriptPositionBiotype
ENSG00000099365 (STX1B)
syntaxin 1B 		ENST00000215095 (STX1B-001) 30989256-31010628 protein_coding
ENST00000561836 (STX1B-004) 31000896-31010502 retained_intron
ENST00000565419 (STX1B-003) 30992708-31010396 protein_coding
ENST00000566211 (STX1B-005) 30996199-30997044 retained_intron
ENST00000569638 (STX1B-002) 30989258-31000955 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0001X8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000042289-ENSMUSG00000030806 CGP 10090 7:127785608-127824549
GeneTranscriptPositionBiotype
ENSMUSG00000030805 (Stx4a)
syntaxin 4A (placental) 		ENSMUST00000033075 (Stx4a-001) 127841764-127849019 protein_coding
ENSMUST00000121705 (Stx4a-002) 127841968-127849019 protein_coding
ENSMUST00000123180 (Stx4a-007) 127845784-127848498 retained_intron
ENSMUST00000125861 (Stx4a-009) 127848391-127849019 retained_intron
ENSMUST00000138294 (Stx4a-006) 127842685-127846586 retained_intron
ENSMUST00000138399 (Stx4a-005) 127841970-127843944 retained_intron
ENSMUST00000142849 (Stx4a-008) 127843598-127848677 retained_intron
ENSMUST00000152310 (Stx4a-003) 127824294-127849019 processed_transcript
ENSMUST00000156537 (Stx4a-004) 127841978-127846618 nonsense_mediated_decay
ENSMUSG00000030806 (Stx1b)
syntaxin 1B 		ENSMUST00000106267 (Stx1b-001) 127803900-127824549 protein_coding
ENSMUST00000156135 (Stx1b-002) 127807372-127810924 retained_intron
ENSMUSG00000042289 (Hsd3b7)
hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 		ENSMUST00000046863 (Hsd3b7-001) 127800604-127803802 protein_coding
ENSMUST00000106271 (Hsd3b7-012) 127800916-127803802 protein_coding
ENSMUST00000106272 (Hsd3b7-005) 127800614-127803802 protein_coding
ENSMUST00000124631 (Hsd3b7-009) 127800658-127802113 retained_intron
ENSMUST00000125188 (Hsd3b7-007) 127800636-127802022 processed_transcript
ENSMUST00000132702 (Hsd3b7-002) 127800604-127803802 retained_intron
ENSMUST00000136597 (Hsd3b7-010) 127800671-127802327 retained_intron
ENSMUST00000136823 (Hsd3b7-006) 127799391-127802022 processed_transcript
ENSMUST00000138432 (Hsd3b7-013) 127800941-127801518 protein_coding
ENSMUST00000139068 (Hsd3b7-011) 127800680-127802038 protein_coding
ENSMUST00000144748 (Hsd3b7-004) 127800604-127803802 retained_intron
ENSMUST00000154987 (Hsd3b7-003) 127785608-127803802 processed_transcript
ENSMUST00000155005 (Hsd3b7-008) 127800646-127802270 processed_transcript
ENSMUSG00000042308 (Setd1a)
SET domain containing 1A 		ENSMUST00000047075 (Setd1a-001) 127776670-127800122 protein_coding
ENSMUST00000047157 (Setd1a-201) 127777389-127800115 protein_coding
ENSMUST00000126761 (Setd1a-004) 127777389-127783701 protein_coding
ENSMUST00000141439 (Setd1a-005) 127778577-127781903 processed_transcript
ENSMUST00000143951 (Setd1a-003) 127777695-127778565 protein_coding
ENSMUST00000144406 (Setd1a-002) 127777149-127784074 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001X8_0001ENSG00000099365ENST00000215095ENST00000561836ENST00000565419ENST00000566211ENST00000569638CIL_0001X8_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001X8_0001ENSG00000099365ENST00000215095ENST00000561836ENST00000565419ENST00000566211ENST00000569638CIL_0001X8_0002ENSMUSG00000030805ENSMUST00000033075ENSMUST00000121705ENSMUST00000125861ENSMUST00000142849ENSMUST00000156537ENSMUSG00000030806ENSMUST00000106267ENSMUST00000156135ENSMUSG00000042289ENSMUST00000046863ENSMUST00000132702ENSMUST00000144748ENSMUST00000154987ENSMUSG00000042308ENSMUST00000047075ENSMUST00000047157
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000099365 ENST00000215095 N/A N/A N/A 62.400±0.00 N/A 0.132±0.00 N/A N/A N/A N/A N/A 0.426±0.00 N/A 1.058±0.24
ENST00000561836 N/A N/A N/A 6.588±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.040±0.00 N/A
ENST00000565419 N/A N/A N/A 3.178±0.00 N/A 0.031±0.00 N/A N/A N/A N/A N/A 0.478±0.43 0.106±0.00 4.870±0.00
ENST00000566211 N/A N/A 0.184±0.00 N/A N/A N/A N/A 0.721±0.00 N/A N/A N/A N/A 0.135±0.00 N/A
ENST00000569638 0.554±0.00 1.801±0.00 0.094±0.00 5.231±0.00 0.481±0.33 0.456±0.00 0.182±0.00 0.296±0.18 0.628±0.00 0.176±0.00 0.132±0.00 0.461±0.24 0.063±0.02 1.133±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030805 ENSMUST00000033075 23.300±1.66 12.029±3.30 33.891±3.94 N/A 18.995±0.35 17.467±4.57 22.622±1.60 16.589±2.25 14.273±3.24 20.607±1.38 23.222±2.91 14.614±3.78 26.331±4.51 4.025±1.50
ENSMUST00000121705 13.841±1.06 13.313±2.69 18.431±3.98 N/A 12.666±0.80 10.992±1.87 9.284±2.59 5.956±1.48 7.742±1.92 12.964±1.04 8.947±1.31 15.494±3.59 18.429±7.10 2.814±0.45
ENSMUST00000123180 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125861 N/A 20.856±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138399 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142849 N/A N/A 27.638±7.39 N/A N/A N/A N/A N/A N/A N/A N/A 33.720±12.38 46.247±13.21 7.873±0.00
ENSMUST00000152310 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156537 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.010±0.00 N/A 3.538±0.00
ENSMUSG00000030806 ENSMUST00000106267 6.589±3.76 4.428±1.55 1.922±0.00 64.868±45.21 6.603±2.63 2.268±0.43 1.256±0.19 1.081±0.08 2.300±1.02 1.419±0.00 N/A 2.959±1.28 2.823±1.29 0.697±0.35
ENSMUST00000156135 N/A N/A N/A 549.561±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000042289 ENSMUST00000046863 35.494±7.91 33.697±3.32 19.435±2.53 2.739±0.00 37.146±8.54 21.141±4.10 9.686±2.72 14.539±1.12 247.298±193.31 24.586±1.68 3.696±1.21 27.422±6.47 18.739±2.17 N/A
ENSMUST00000106271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000106272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124631 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132702 N/A 20.314±1.58 N/A N/A 12.519±1.48 12.044±3.02 3.060±0.00 6.073±0.16 78.755±54.11 10.262±0.45 N/A 6.067±0.00 N/A N/A
ENSMUST00000136597 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136823 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138432 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139068 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144748 10.210±1.56 N/A 9.610±1.47 2.701±0.00 N/A 5.497±0.36 2.889±0.46 N/A 16.815±11.44 8.573±0.49 N/A 6.383±1.05 5.840±0.83 N/A
ENSMUST00000154987 N/A N/A N/A 2.021±0.00 N/A N/A N/A N/A N/A N/A N/A 4.564±0.00 3.333±1.30 N/A
ENSMUST00000155005 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000042308 ENSMUST00000047075 2.082±0.03 2.689±0.41 N/A 1.451±0.44 3.179±0.72 1.593±0.19 N/A 1.404±0.10 N/A N/A 1.418±0.23 2.578±0.44 3.479±0.00 1.632±0.71
ENSMUST00000047157 3.657±0.21 3.192±0.77 3.361±1.41 4.839±2.00 3.623±0.34 3.612±0.78 2.858±0.87 3.209±0.44 5.485±0.65 4.864±0.81 4.174±0.70 5.944±5.43 9.486±8.00 5.088±0.80
ENSMUST00000126761 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141439 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143951 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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