C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntaxin 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000569638 STX1B-002 ENSG00000099365 9606 - 16:30989258-31000955 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000569638
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000569638 0.554±0.00 1.801±0.00 0.094±0.00 5.231±0.00 0.481±0.33 0.456±0.00 0.182±0.00 0.296±0.18 0.628±0.00 0.176±0.00 0.132±0.00 0.461±0.24 0.063±0.02 1.133±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001X8 CIL_0001X8_0001 CGP 16:30985207-31010628
CIL_0001XW CIL_0001XW_0001 CGP 16:30989256-31042975

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000149 IEA SNARE binding
GO:0005484 IEA SNAP receptor activity
GO:0005515 IEA protein binding
GO:0006886 IEA intracellular protein transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106267 Stx1b-001 protein_coding Mus_musculus 0 1059
ENSDART00000081951 stx1b-001 protein_coding Danio_rerio 0 542
ENSMUST00000005509 Stx1a-001 protein_coding Mus_musculus 0 492
ENSMUST00000156135 Stx1b-002 retained_intron Mus_musculus 0 460
ENSMUST00000133812 Stx1a-005 processed_transcript Mus_musculus 0 342
ENSMUST00000144198 Stx1a-004 processed_transcript Mus_musculus 0 340
ENSMUST00000150838 Stx1a-003 nonsense_mediated_decay Mus_musculus 0 340
ENSMUST00000156626 Stx1a-002 retained_intron Mus_musculus 0 340

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